- Class: 3
- Architecture: 3.30:2-Layer Sandwich
- Topology: 3.30.1360:Gyrase A
- Homology: 3.30.1360.120:Probable tRNA modification gtpase trme
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1pj5 | [A4] | [A4] | [A4] | 1.61 | ACT:ACETATE ION FAD:FLAVIN-ADENINE DINUCLEOTIDE NA:SODIUM ION | |||
1pj6 | [A4] | [A4] | [A4] | 1.65 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FOL:FOLIC ACID NA:SODIUM ION | |||
1pj7 | [A4] | [A4] | [A4] | 2.1 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FFO:N-[4-({[(6S)-2-AMINO-5-FORMYL-4-OXO-3,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID NA:SODIUM ION | |||
1v5v | [A2] | [A2] | [A2] | 1.5 | GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
1vlo | ![]() | [A] | [A] | [A] | 1.7 | MSE:SELENOMETHIONINE | ||
1vrq | [ABCD] | [ABCD] | [ABCD] | 2.2 | DMG:N,N-DIMETHYLGLYCINE FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE FON:FOLINIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO4:SULFATE ION ZN:ZINC ION | |||
1woo | [A] | [A] | [A] | 2.4 | THG:(6S)-5,6,7,8-TETRAHYDROFOLATE | |||
1wop | [A] | [A] | [A] | 2 | FFO:5-FORMYL-6-HYDROFOLIC ACID | |||
1wor | [A] | [A] | [A] | 1.95 | RED:DIHYDROLIPOIC ACID | |||
1wos | [A] | [A] | [A] | 1.84 | ||||
1wsr | [A2] | [A2] | [A2] | 2 | SO4:SULFATE ION | |||
1wsv | [A2] | [A2] | [A2] | 2.6 | SO4:SULFATE ION THH:N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID | |||
1x31 | [ABCD] | [ABCD] | [ABCD] | 2.15 | DMG:N,N-DIMETHYLGLYCINE FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO4:SULFATE ION ZN:ZINC ION | |||
1xzp | [AB] | [AB] | [AB] | 2.3 | SO4:SULFATE ION | |||
1xzq | [AB] | [AB] | [AB] | 2.9 | FON:FOLINIC ACID | |||
1yx2 | [A] | [A] | [A] | 2.08 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE | |||
2gag | [ABCD] | [ABCD] | [ABCD] | 1.85 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE FOA:2-FUROIC ACID GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO3:SULFITE ION ZN:ZINC ION | |||
2gah | [ABCD] | [ABCD] | [ABCD] | 2 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE FOA:2-FUROIC ACID MSE:SELENOMETHIONINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
3a8i | [AB] | [AB] | [AB] | 1.99 | C2F:5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID LA2:N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]-L-LYSINE PO4:PHOSPHATE ION | |||
3a8j | [AB] | [AB] | [AB] | 1.98 | LA2:N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]-L-LYSINE | |||
3a8k | ![]() | [AB] | [AB] | [AB] | 1.95 | LA2:N~6~-[(6R)-6,8-DISULFANYLOCTANOYL]-L-LYSINE | ||
3ad7 | [ABCD] | [ABCD] | [ABCD] | 2.2 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE MTG:[METHYLTHIO]ACETATE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO4:SULFATE ION ZN:ZINC ION | |||
3ad8 | [ABCD] | [ABCD] | [ABCD] | 2.2 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PYC:PYRROLE-2-CARBOXYLATE SO4:SULFATE ION ZN:ZINC ION | |||
3ad9 | [ABCD] | [ABCD] | [ABCD] | 2.3 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO4:SULFATE ION ZN:ZINC ION | |||
3ada | [ABCD] | [ABCD] | [ABCD] | 2.2 | FAD:FLAVIN-ADENINE DINUCLEOTIDE FMN:FLAVIN MONONUCLEOTIDE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO3:SULFITE ION SO4:SULFATE ION ZN:ZINC ION | |||
3gee | [A2] | [A2] | [A2] | 2.95 | FON:FOLINIC ACID GDP:GUANOSINE-5___sq___-DIPHOSPHATE | |||
3geh | [A2] | [A2] | [A2] | 3.2 | FON:FOLINIC ACID GDP:GUANOSINE-5___sq___-DIPHOSPHATE ZN:ZINC ION | |||
3gei | [A2] | [A2] | [A2] | 3.4 | GCP:PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER MG:MAGNESIUM ION | |||
3gir | [A] | [A] | [A] | 1.6 | NA:SODIUM ION | |||
3gsi | ![]() | [A4] | [A4] | [A4] | 2 | FAD:FLAVIN-ADENINE DINUCLEOTIDE MG:MAGNESIUM ION THG:(6S)-5,6,7,8-TETRAHYDROFOLATE | ||
3tfh | [A2] | [A2] | [A2] | 2.1 | GOL:GLYCEROL NA:SODIUM ION | |||
3tfi | [A2] | [A2] | [A2] | 1.6 | DQY:3-(DIMETHYL-LAMBDA~4~-SULFANYL)PROPANOIC ACID GOL:GLYCEROL NA:SODIUM ION | |||
3tfj | [A2] | [A2] | [A2] | 1.6 | ACT:ACETATE ION GOL:GLYCEROL NA:SODIUM ION THG:(6S)-5,6,7,8-TETRAHYDROFOLATE | |||
3ttg | [A] | [A] | [A] | 2 | CL:CHLORIDE ION MSE:SELENOMETHIONINE | |||
4p9s | [A] | [A] | [A] | 2.32 | FAD:FLAVIN-ADENINE DINUCLEOTIDE | |||
4paa | [A] | [A] | [A] | 2.26 | FAD:FLAVIN-ADENINE DINUCLEOTIDE THG:(6S)-5,6,7,8-TETRAHYDROFOLATE | |||
4pab | ![]() | [A] | [A] | [A] | 1.85 | FAD:FLAVIN-ADENINE DINUCLEOTIDE SCN:THIOCYANATE ION THG:(6S)-5,6,7,8-TETRAHYDROFOLATE | ||
5l46 | [A] | [A] | [A] | 3.09 | FAD:FLAVIN-ADENINE DINUCLEOTIDE |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA