124 OLIGAMI : Oligomer Architecture and Molecular Interface
Domains

CATH

PDB Entries

PDB ID OPM Mutant Chain Formula Resolution HETNAM
Amino Acid sequence SCOPe Family Level CATH Homology Level
1axc[A3][a3][A3][a3][A3][a3]2.6
1b77[A3][A3][A3]2.1
1b8h[A3][a][A3][a][A3][a]3
1czd[A3][A3][A3]2.45
1dml[AB][AB][AB]2.7
1ge8[A3][A3][A3]2.1
1isq[A3][a3][A3][a3][A3][a3]2.3
ACE:ACETYL GROUP
1iz4[A][A][A]2
1iz5[A][A][A]1.8
1plq[A3][A3][A3]2.3
HG:MERCURY (II) ION
1plr[A3][A3][A3]3
1rwz[A3][A3][A3]1.8
1rxm[A3][a3][A3][a3][A3][a3]2.8
1rxz[A3][a3][A3][a3][A3][a3]2
1sxj[A3BCDEF][A5B3][A5B3]2.85
ADP:ADENOSINE-5___sq___-DIPHOSPHATE
AGS:PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
MG:MAGNESIUM ION
MSE:SELENOMETHIONINE
1t6l[A2][A2][A2]1.85
1u76[A3][a3][A3][a3][A3][a3]2.6
1u7b[A3][a3][A3][a3][A3][a3]1.88
1ud9[A][A][A]1.68
ZN:ZINC ION
1ul1[A3B3][A3B3][A3B3]2.9
MG:MAGNESIUM ION
1vyj[A3][a3][A3][a3][A3][a3]2.8
1vym[A3][A3][A3]2.3
1w60[A3][A3][A3]3.15
1yyp[A2][a2][A2][a2][A2][a2]2.5
EDO:1,2-ETHANEDIOL
SO4:SULFATE ION
2avt[A2][A2][A2]2
2awa[A2][A2][A2]2.5
GOL:GLYCEROL
MSE:SELENOMETHIONINE
2hii[ABC][A2B][A3]2.79
MSE:SELENOMETHIONINE
2hik[ABC][ABC][A3]3.3
MSE:SELENOMETHIONINE
2ijx[A][A][A]1.9
EDO:1,2-ETHANEDIOL
2io4[AB][AB][A2]2.6
CA:CALCIUM ION
MPD:(4S)-2-METHYL-2,4-PENTANEDIOL
2ix2[ABC][A2B][A3]2.2
2izo[ABC][ABC][A2B]2.9
MG:MAGNESIUM ION
ZN:ZINC ION
2nti[ABC][A2B][A3]2.5
7PG:2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
BR:BROMIDE ION
K:POTASSIUM ION
2od8[A3][a3][A3][a3][A3][a3]2.8
2z0l[A2][A2][A2]2.9
CL:CHLORIDE ION
MSE:SELENOMETHIONINE
2zvk[A3][a3][A3][a3][A3][a3]2.7
2zvl[A3][a3][A3][a3][A3][a3]2.5
SO4:SULFATE ION
ZN:ZINC ION
2zvm[A3][a3][A3][a3][A3][a3]2.3
2zvv[A3][a3][A3][a3][A3][a3]2
SO4:SULFATE ION
2zvw[A3][a3][A3][a3][A3][a3]2.5
SO4:SULFATE ION
3a1j[ABC][ABC][A3]2.5
FRU:BETA-D-FRUCTOFURANOSE
GLC:ALPHA-D-GLUCOPYRANOSE
MSE:SELENOMETHIONINE
3a2f[AB][AB][AB]2.67
MSE:SELENOMETHIONINE
3aix[A2B2][A2B2][A4]2.9
SO4:SULFATE ION
3aiz[A2B2][A2B2][A4]2.8
SO4:SULFATE ION
3f1w[A][A][A]2.9
3fds[ABC][ABC][A2B]2.05
1PE:PENTAETHYLENE GLYCOL
EDO:1,2-ETHANEDIOL
GOL:GLYCEROL
PEG:DI(HYDROXYETHYL)ETHER
PGE:TRIETHYLENE GLYCOL
3g65[ABC][ABC][A3]2.9
3ggr[ABC][ABC][A3]3.2
3gpm[A3][A3][A3]3.8
3gpn[A2][A2][A2]2.5
3hi8[A3][A3][A3]3.2
3hsl[A2][A2][A2]2.8
3i2m[A2][A2][A2]2.81
MSE:SELENOMETHIONINE
3ifv[A3][A3][A3]2
NA:SODIUM ION
3k4x[A](AB)[A](AB)[A](AB)2.98
3lx1[A3][A3][A3]2
SO4:SULFATE ION
3lx2[A3][A3][A3]2.4
SO4:SULFATE ION
3p83[A3B3][A3B3][A3B3]3.05
3p87[A3][a3][A3][a3][A3][a3]2.99
3p91[A3][A3][A3]2.4
3tbl[A3B2][A3B2][A3B2]2.9
3u5z[A4B3C](AB)[A4B3C](AB)[A4B3C](AB)3.5
08T:[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-TRIS(FLUORANYL)BERYLLIUM
ADP:ADENOSINE-5___sq___-DIPHOSPHATE
MG:MAGNESIUM ION
MSE:SELENOMETHIONINE
3u60[A4B3C](AB)[A4B3C](AB)[A4B3C](AB)3.34
08T:[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-TRIS(FLUORANYL)BERYLLIUM
ADP:ADENOSINE-5___sq___-DIPHOSPHATE
MG:MAGNESIUM ION
MSE:SELENOMETHIONINE
3u61[A4B3C](AB)[A4B3C](AB)[A4B3C](AB)3.2
08T:[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-TRIS(FLUORANYL)BERYLLIUM
ADP:ADENOSINE-5___sq___-DIPHOSPHATE
MG:MAGNESIUM ION
MSE:SELENOMETHIONINE
3v60[A3B3][A3B3][A3B3]2.6
SO4:SULFATE ION
3v61[AB][AB][AB]2.8
BA:BARIUM ION
NEQ:N-ETHYLMALEIMIDE
3v62[ABC][ABC][ABC]2.9
MLY:N-DIMETHYL-LYSINE
NEQ:N-ETHYLMALEIMIDE
SO4:SULFATE ION
3vkx[A3][A3][A3]2.1
CL:CHLORIDE ION
SO4:SULFATE ION
T3:3,5,3___sq___TRIIODOTHYRONINE
3wgw[A3][A3][A3]2.8
SO4:SULFATE ION
T2B:4-{4-[(2S)-2-AMINO-3-HYDROXYPROPYL]-2,6-DIIODOPHENOXY}PHENOL
4cs5[A][A][A]3
4d2g[A3][a2][A3][a2][A3][a2]2.65
4hk1[A3][A3][A3]2
4l60[A][A][A]3
4l6p[A][A][A]2.68
GOL:GLYCEROL
4rjf[A3][a3][A3][a3][A3][a3]2.01
4tr6[A2][A2][A2]1.5
NA:SODIUM ION
4yhr[A3][A3][A3]2.95
4ztd[A3][a2b][A3][a2b][A3][a2b]2.2
5a6d[A3][A3][A3]2.8
5auj[A3][A3][A3]2.5
MSE:SELENOMETHIONINE
5b7o[A3][A3][A3]2.95
5cfk[A3][A3][A3]3.2
5da7[AB][AB][AB]2.8
SO4:SULFATE ION
5dai[A3][a3][A3][a3][A3][a3]2
SO4:SULFATE ION
5e0t[A3][A3][A3]2.67
5e0u[A][a][A][a][A][a]1.93
5e0v[A][a][A][a][A][a]2.07
5h0t[A6][A6][A6]2.73
PEG:DI(HYDROXYETHYL)ETHER
5hac[A6][A6][A6]2.95
5iwd[A2][A2][A2]2.56
6EV:5-METHYLIDENE-3-(METHYLSULFANYL)-2-BENZOTHIOPHEN-4(5H)-ONE
5ixa[A2][A2][A2]2.68
5iy4[A3][a3][A3][a3][A3][a3]2.95
5jne[ABCD][ABCD][ABCD]2.85
6LN:ETHANE-1,2-DITHIOL
GOL:GLYCEROL
ZN:ZINC ION
5mav[A3][a3][A3][a3][A3][a3]2.58
5mlo[A3][A3][A3]1.96
NA:SODIUM ION
5mlw[A3][A3][A3]2.45
SO4:SULFATE ION
5mom[A3][A3][A3]2.27
5t9d[A3][A3][A3]3.27
5tup[A3][A3][A3]2.6
5v7k[A3][A3][A3]3.05
5v7l[A3][A3][A3]3.2
5v7m[A3][A3][A3]1.93
MG:MAGNESIUM ION
5yco[A3][a][A3][a][A3][a]2.2
GOL:GLYCEROL
SO4:SULFATE ION
5yd8[A][a][A][a][A][a]2.3
5zut[A][a][A][a][A][a]2.82
6cbi[A3][a3][A3][a3][A3][a3]2.75
DAB:2,4-DIAMINOBUTYRIC ACID
SO4:SULFATE ION
6cx2[A3][A3][A3]3.1
6cx3[A3][A3][A3]3.1
6cx4[A3][A3][A3]3.08
6d0q[A3][A3][A3]2.8
6d0r[A3][A3][A3]2.86
6drt[A3][a3][A3][a3][A3][a3]2.12
EDO:1,2-ETHANEDIOL
6e49[A3][a3][A3][a3][A3][a3]2.9
6eht[A2B][a2](AB)[A2B][a2](AB)[A3][a2](AB)3.2
6fcm[A3][A3][A3]2.8
6fcn[A3][A3][A3]3.22
6gis[A3](AB)[A3](AB)[A3](AB)2.82
6gws[A3B3][A3B3][A3B3]2.9
6hvo[A3][a3][A3][a3][A3][a3]2.1
SO4:SULFATE ION
6j0j[A3][A3][A3]3.1
GOL:GLYCEROL
PEG:DI(HYDROXYETHYL)ETHER
6k2m[A3][A3][A3]3.19
ARG:ARGININE
6o09[A3][a3][A3][a3][A3][a3]2.06
6qc0[A3][a3][A3][a3][A3][a3]3.5
6qcg[A3][a3][A3][a3][A3][a3]3.4
*Chain Formula of OLIGAMI.
  [ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
  ( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
PDL