- Class: 1
- Architecture: 1.10:Orthogonal Bundle
- Topology: 1.10.101:Muramoyl-pentapeptide Carboxypeptidase
- Homology: 1.10.101.10:PGBD-like superfamily/PGBD
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1eak | ![]() | ![]() | [A2][a] | [A2][a] | [A2][a] | 2.66 | CA:CALCIUM ION SO4:SULFATE ION ZN:ZINC ION | |
1l6j | [A] | [A] | [A] | 2.5 | CA:CALCIUM ION ZN:ZINC ION | |||
1lbu | [A] | [A] | [A] | 1.8 | ZN:ZINC ION | |||
2bh7 | [A2] | [A2] | [A2] | 2.2 | MSE:SELENOMETHIONINE SO4:SULFATE ION ZN:ZINC ION | |||
2wkx | [A2] | [A2] | [A2] | 1.8 | CL:CHLORIDE ION GOL:GLYCEROL ZN:ZINC ION | |||
3bkh | [A] | [A] | [A] | 2.5 | MSE:SELENOMETHIONINE NI:NICKEL (II) ION SO4:SULFATE ION | |||
3bkv | [A] | [A] | [A] | 2.6 | MSE:SELENOMETHIONINE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NI:NICKEL (II) ION SO4:SULFATE ION | |||
3d2y | [A][a] | [A][a] | [A][a] | 1.75 | AH0:2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID FGA:GAMMA-D-GLUTAMIC ACID GOL:GLYCEROL | |||
3d2z | [A][a] | [A][a] | [A][a] | 2.8 | CL:CHLORIDE ION FGA:GAMMA-D-GLUTAMIC ACID ZN:ZINC ION | |||
4bj4 | [A2] | [A2] | [A2] | 1.72 | FLC:CITRATE ANION | |||
4bol | ![]() | [A2] | [A2] | [A2] | 1.7 | J0J:D-ALANYL-N-[(2S,6R)-6-AMINO-6-CARBOXY-1-{[(1R)-1-CARBOXYETHYL]AMINO}-1-OXOHEXAN-2-YL]-D-GLUTAMINE ZN:ZINC ION | ||
4bpa | [A2] | [A2] | [A2] | 2.7 | AMU:N-ACETYL-BETA-MURAMIC ACID AMV:METHYL 2-ACETAMIDO-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4bxd | [A2][a2] | [A2][a2] | [A2][a2] | 3.1 | 6CL:6-CARBOXYLYSINE DAL:D-ALANINE FGA:GAMMA-D-GLUTAMIC ACID MAG:METHYL 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSIDE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4bxe | [A4][a4] | [A4][a4] | [A4][a4] | 2.95 | ACT:ACETATE ION AH0:2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID API:2,6-DIAMINOPIMELIC ACID DAL:D-ALANINE DGL:D-GLUTAMIC ACID PEG:DI(HYDROXYETHYL)ETHER | |||
4bxj | [A4] | [A4] | [A4] | 2.35 | GOL:GLYCEROL | |||
4g54 | [A] | [A] | [A] | 1.55 | ||||
4lpq | ![]() | [A] | [A] | [A] | 1.37 | CL:CHLORIDE ION MSE:SELENOMETHIONINE |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA