- Class: 1
- Architecture: 1.10:Orthogonal Bundle
- Topology: 1.10.240:Tyrosyl-Transfer RNA Synthetase
- Homology: 1.10.240.10:Tyrosyl-Transfer RNA Synthetase
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1d2r | [A2] | [A2] | [A2] | 2.9 | ||||
1h3e | [A2](a2) | [A2](a2) | [A2](a2) | 2.9 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE 5MU:5-METHYLURIDINE 5___sq___-MONOPHOSPHATE ATP:ADENOSINE-5___sq___-TRIPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE TYE:4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL | |||
1h3f | [A2] | [A2] | [A2] | 2 | SO4:SULFATE ION TYE:4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL | |||
1i6k | [A2] | [A2] | [A2] | 1.72 | GOL:GLYCEROL MSE:SELENOMETHIONINE NH4:AMMONIUM ION SO4:SULFATE ION TYM:TRYPTOPHANYL-5___sq___AMP | |||
1i6l | [A2] | [A2] | [A2] | 1.72 | GOL:GLYCEROL MSE:SELENOMETHIONINE NH4:AMMONIUM ION SO4:SULFATE ION TYM:TRYPTOPHANYL-5___sq___AMP | |||
1i6m | [A2] | [A2] | [A2] | 1.72 | GOL:GLYCEROL NH4:AMMONIUM ION SO4:SULFATE ION TYM:TRYPTOPHANYL-5___sq___AMP | |||
1j1u | [A2](a2) | [A2](a2) | [A2](a2) | 1.95 | MG:MAGNESIUM ION TYR:TYROSINE | |||
1jii | [A2] | [A2] | [A2] | 3.2 | 383:[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT-3-YL)-ACETIC ACID | |||
1jij | [A2] | [A2] | [A2] | 3.2 | 629:[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETICACID | |||
1jik | [A2] | [A2] | [A2] | 2.8 | 545:[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETICACID BUTYL ESTER | |||
1jil | [A2] | [A2] | [A2] | 2.2 | 485:[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETICACID | |||
1m83 | [A2] | [A2] | [A2] | 2.2 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE GOL:GLYCEROL MG:MAGNESIUM ION | |||
1mau | [A2] | [A2] | [A2] | 2.15 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CIT:CITRIC ACID GOL:GLYCEROL LTN:L-TRYPTOPHANAMIDE MG:MAGNESIUM ION NA:SODIUM ION | |||
1maw | [A2] | [A2] | [A2] | 3 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE | |||
1mb2 | [A2] | [A2] | [A2] | 2.7 | TRP:TRYPTOPHAN | |||
1n3l | [A2] | [A2] | [A2] | 1.18 | GOL:GLYCEROL SO4:SULFATE ION | |||
1o5t | [A2] | [A2] | [A2] | 2.5 | ||||
1q11 | [A2] | [A2] | [A2] | 1.6 | GOL:GLYCEROL K:POTASSIUM ION PO4:PHOSPHATE ION TYE:4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL | |||
1r6t | ![]() | [A2] | [A2] | [A2] | 2.1 | GOL:GLYCEROL MSE:SELENOMETHIONINE TYM:TRYPTOPHANYL-5___sq___AMP | ||
1r6u | ![]() | [A2] | [A2] | [A2] | 2 | GOL:GLYCEROL MSE:SELENOMETHIONINE TYM:TRYPTOPHANYL-5___sq___AMP | ||
1tya | [A2] | [A2] | [A2] | 2.8 | TYR:TYROSINE | |||
1tyb | [A2] | [A2] | [A2] | 2.5 | TYR:TYROSINE | |||
1tyc | [A2] | [A2] | [A2] | 2.5 | ||||
1tyd | [A2] | [A2] | [A2] | 2.5 | TYR:TYROSINE | |||
1u7d | [A2] | [A2] | [A2] | 2.65 | ||||
1u7x | ![]() | [A2] | [A2] | [A2] | 3 | K:POTASSIUM ION | ||
1ulh | [A2] | [A2] | [A2] | 2.31 | ||||
1vbm | [A2] | [A2] | [A2] | 2.7 | SO4:SULFATE ION YSA:5___sq___-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE | |||
1vbn | ![]() | [A2] | [A2] | [A2] | 2.7 | YSA:5___sq___-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE | ||
1wq3 | ![]() | [A2] | [A2] | [A2] | 2 | IYR:3-IODO-TYROSINE | ||
1wq4 | ![]() | [A2] | [A2] | [A2] | 2 | TYR:TYROSINE | ||
1x8x | [A2] | [A2] | [A2] | 2 | SO4:SULFATE ION TYR:TYROSINE | |||
1y42 | [A2] | [A2] | [A2] | 1.95 | TYR:TYROSINE | |||
1yi8 | [A2] | [A2] | [A2] | 2.1 | TRP:TRYPTOPHAN | |||
1yia | [A2] | [A2] | [A2] | 3.7 | HRP:5-HYDROXY-L-TRYPTOPHAN | |||
1yid | [A2] | [A2] | [A2] | 2.4 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION | |||
1zh0 | ![]() | [A] | [A] | [A] | 1.9 | NAL:BETA-(2-NAPHTHYL)-ALANINE TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
1zh6 | ![]() | [A] | [A] | [A] | 2.5 | 4AF:4-ACETYL-L-PHENYLALANINE BME:BETA-MERCAPTOETHANOL | ||
2a4m | [A2] | [A2] | [A2] | 2.3 | TRP:TRYPTOPHAN | |||
2ag6 | ![]() | [A] | [A] | [A] | 1.9 | 4BF:4-BROMO-L-PHENYLALANINE | ||
2ake | [A2](a2) | [A2](a2) | [A2](a2) | 3.1 | SO4:SULFATE ION TRP:TRYPTOPHAN | |||
2azx | ![]() | [A2](a2) | [A2](a2) | [A2](a2) | 2.8 | GOL:GLYCEROL MG:MAGNESIUM ION MSE:SELENOMETHIONINE SO4:SULFATE ION TRP:TRYPTOPHAN | ||
2cya | [A2] | [A2] | [A2] | 2.2 | SO4:SULFATE ION | |||
2cyb | [A2] | [A2] | [A2] | 1.8 | TYR:TYROSINE | |||
2cyc | [A2] | [A2] | [A2] | 2.2 | TYR:TYROSINE | |||
2dlc | [A2](a2) | [A2](a2) | [A2](a2) | 2.4 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE 2MG:2N-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE 5MC:5-METHYLCYTIDINE-5___sq___-MONOPHOSPHATE 5MU:5-METHYLURIDINE 5___sq___-MONOPHOSPHATE 6IA:N6-ISOPENTENYL-ADENOSINE-5___sq___-MONOPHOSPHATE M2G:N2-DIMETHYLGUANOSINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE YMP:O-(ADENOSINE-5___sq___-O-YL)-N-(L-TYROSYL)PHOSPHORAMIDATE | |||
2dr2 | [A2](a2) | [A2](a2) | [A2](a2) | 3 | SO4:SULFATE ION TRP:TRYPTOPHAN | |||
2el7 | [A2] | [A2] | [A2] | 2.5 | PO4:PHOSPHATE ION | |||
2g36 | [A2] | [A2] | [A2] | 2.5 | SF4:IRON/SULFUR CLUSTER TRP:TRYPTOPHAN | |||
2hgz | ![]() | [A2] | [A2] | [A2] | 2.5 | PBF:PARA-(BENZOYL)-PHENYLALANINE | ||
2ip1 | [A] | [A] | [A] | 1.8 | PG4:TETRAETHYLENE GLYCOL | |||
2j5b | [A2] | [A2] | [A2] | 2.2 | TYE:4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL | |||
2jan | [A2] | [A2] | [A2] | 2.9 | ||||
2ov4 | [A2] | [A2] | [A2] | 2.5 | ANL:ANILINE AQP:ADENOSINE-5___sq___-TETRAPHOSPHATE CS:CESIUM ION GOL:GLYCEROL | |||
2pid | [A2] | [A2] | [A2] | 2.2 | YSA:5___sq___-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE | |||
2pxh | [A] | [A] | [A] | 1.97 | BP5:3-(2,2___sq___-BIPYRIDIN-5-YL)-L-ALANINE | |||
2quh | [A2] | [A2] | [A2] | 2.4 | TRP:TRYPTOPHAN | |||
2qui | [A2] | [A2] | [A2] | 2.4 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE LTN:L-TRYPTOPHANAMIDE MG:MAGNESIUM ION | |||
2quj | [A2] | [A2] | [A2] | 2.42 | CL:CHLORIDE ION GOL:GLYCEROL TRP:TRYPTOPHAN TYM:TRYPTOPHANYL-5___sq___AMP | |||
2quk | [A2] | [A2] | [A2] | 2.8 | ||||
2ts1 | [A2] | [A2] | [A2] | 2.3 | ||||
2yxn | ![]() | [A2] | [A2] | [A2] | 1.8 | AZY:3-AZIDO-L-TYROSINE | ||
2yy5 | ![]() | [A2] | [A2] | [A2] | 2.55 | SO4:SULFATE ION WSA:5___sq___-O-[(L-TRYPTOPHYLAMINO)SULFONYL]ADENOSINE | ||
2zp1 | ![]() | [A2] | [A2] | [A2] | 1.7 | IYR:3-IODO-TYROSINE | ||
3a04 | [A2] | [A2] | [A2] | 1.97 | CD:CADMIUM ION SF4:IRON/SULFUR CLUSTER | |||
3a05 | [A2] | [A2] | [A2] | 2.2 | CD:CADMIUM ION SF4:IRON/SULFUR CLUSTER TRP:TRYPTOPHAN | |||
3d6u | ![]() | [A] | [A] | [A] | 2.2 | BME:BETA-MERCAPTOETHANOL T11:4-[3-(TRIFLUOROMETHYL)DIAZIRIDIN-3-YL]-L-PHENYLALANINE | ||
3d6v | ![]() | [A] | [A] | [A] | 2.2 | BME:BETA-MERCAPTOETHANOL TFQ:4-(2,2,2-TRIFLUOROETHYL)-L-PHENYLALANINE | ||
3fhj | [A2] | [A2] | [A2] | 2.65 | AMP:ADENOSINE MONOPHOSPHATE PO4:PHOSPHATE ION TRP:TRYPTOPHAN | |||
3fi0 | [A2] | [A2] | [A2] | 2.7 | AMP:ADENOSINE MONOPHOSPHATE MSE:SELENOMETHIONINE PO4:PHOSPHATE ION TRP:TRYPTOPHAN | |||
3foc | [A4] | [A4] | [A4] | 2.09 | GOL:GLYCEROL SO4:SULFATE ION | |||
3hv0 | [A2] | [A2] | [A2] | 2.42 | TRP:TRYPTOPHAN | |||
3hzr | [A2] | [A2] | [A2] | 3 | ||||
3i05 | [A2] | [A2] | [A2] | 2.8 | ||||
3jxe | [A2] | [A2] | [A2] | 3 | SO4:SULFATE ION TYM:TRYPTOPHANYL-5___sq___AMP | |||
3kt0 | [A2] | [A2] | [A2] | 2.1 | EMN:(2S)-1-{[(2S)-3-(2-METHOXYETHOXY)-2-METHYLPROPYL]OXY}PROPAN-2-AMINE | |||
3kt3 | [A2] | [A2] | [A2] | 2.6 | SO4:SULFATE ION TYM:TRYPTOPHANYL-5___sq___AMP | |||
3kt6 | [A2] | [A2] | [A2] | 2.8 | SO4:SULFATE ION TRP:TRYPTOPHAN | |||
3kt8 | [A2] | [A2] | [A2] | 3 | LTN:L-TRYPTOPHANAMIDE SO4:SULFATE ION | |||
3m5w | [A2] | [A2] | [A2] | 2.32 | GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
3n2y | ![]() | [A2] | [A2] | [A2] | 2.49 | TEF:4-(2H-TETRAZOL-2-YL)-L-PHENYLALANINE | ||
3n9i | [A2] | [A2] | [A2] | 1.95 | CA:CALCIUM ION GOL:GLYCEROL | |||
3p0h | [A] | [A] | [A] | 3 | FSE:3,7,3___sq___,4___sq___-TETRAHYDROXYFLAVONE MSE:SELENOMETHIONINE | |||
3p0i | [A] | [A] | [A] | 3.13 | MSE:SELENOMETHIONINE TYE:4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL | |||
3p0j | [A] | [A] | [A] | 2.89 | NA:SODIUM ION TYE:4-[(2S)-2-AMINO-3-HYDROXYPROPYL]PHENOL | |||
3prh | ![]() | [A2] | [A2] | [A2] | 2.8 | |||
3qe4 | [A] | [A] | [A] | 2.3 | 4CF:4-CYANO-L-PHENYLALANINE | |||
3sz3 | [A2] | [A2] | [A2] | 1.5 | GOL:GLYCEROL TRP:TRYPTOPHAN | |||
3ts1 | [A2] | [A2] | [A2] | 2.7 | TYA:PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYLESTER ADENOSIN-5___sq___YL ESTER | |||
3tze | ![]() | [A2] | [A2] | [A2] | 2.6 | K:POTASSIUM ION TRP:TRYPTOPHAN | ||
3tzl | [A2] | [A2] | [A2] | 2.15 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MSE:SELENOMETHIONINE NA:SODIUM ION PO4:PHOSPHATE ION TRP:TRYPTOPHAN | |||
3u1v | [A2] | [A2] | [A2] | 2.8 | MSE:SELENOMETHIONINE | |||
3vgj | [A2] | [A2] | [A2] | 2.21 | AMP:ADENOSINE MONOPHOSPHATE TYR:TYROSINE | |||
3zxi | [A2] | [A2] | [A2] | 2.75 | TYA:PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYLESTER ADENOSIN-5___sq___YL ESTER | |||
4hjr | ![]() | [A2] | [A2] | [A2] | 2.5 | |||
4hjx | ![]() | [A2] | [A2] | [A2] | 2.91 | F2Y:3,5-DIFLUORO-L-TYROSINE | ||
4hk4 | ![]() | [A2] | [A2] | [A2] | 2.3 | PEG:DI(HYDROXYETHYL)ETHER | ||
4hpw | ![]() | [A2] | [A2] | [A2] | 2 | 3YM:3-METHOXY-L-TYROSINE | ||
4j75 | [A2] | [A2] | [A2] | 2.4 | GOL:GLYCEROL TYM:TRYPTOPHANYL-5___sq___AMP | |||
4j76 | [A2] | [A2] | [A2] | 2.34 | GOL:GLYCEROL | |||
4jfa | [A2] | [A2] | [A2] | 2.6 | BME:BETA-MERCAPTOETHANOL K:POTASSIUM ION TRP:TRYPTOPHAN | |||
4nd6 | ![]() | [A2] | [A2] | [A2] | 2 | GOL:GLYCEROL | ||
4nd7 | ![]() | [A2] | [A2] | [A2] | 2 | BME:BETA-MERCAPTOETHANOL NA:SODIUM ION | ||
4nda | ![]() | [A2] | [A2] | [A2] | 1.7 | GOL:GLYCEROL NA:SODIUM ION NIY:META-NITRO-TYROSINE | ||
4nx2 | ![]() | [A] | [A] | [A] | 2 | 2LT:3,5-DICHLORO-L-TYROSINE | ||
4ojm | [A2] | [A2] | [A2] | 1.95 | TYR:TYROSINE | |||
4oud | ![]() | [AB] | [AB] | [AB] | 2.65 | BIF:(R)-2-AMINO-3-(4-PHENYLCYCLOHEXYL)PROPANOIC ACID TYR:TYROSINE | ||
4pbr | ![]() | [A2] | [A2] | [A2] | 1.9 | 2L7:4-[(2-BROMO-2-METHYLPROPANOYL)AMINO]-L-PHENYLALANINE GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | ||
4pbs | ![]() | [A2] | [A2] | [A2] | 2.01 | 2L7:4-[(2-BROMO-2-METHYLPROPANOYL)AMINO]-L-PHENYLALANINE | ||
4pbt | ![]() | [A2] | [A2] | [A2] | 1.9 | 2LQ:4-{[(1R,4E)-CYCLOOCT-4-EN-1-YLCARBONYL]AMINO}-L-PHENYLALANINE GOL:GLYCEROL P4G:1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE | ||
4q93 | [A2] | [A2] | [A2] | 2.1 | CL:CHLORIDE ION GOL:GLYCEROL PO4:PHOSPHATE ION SO4:SULFATE ION STL:RESVERATROL | |||
4qbt | [A2] | [A2] | [A2] | 2.1 | GOL:GLYCEROL K:POTASSIUM ION PO4:PHOSPHATE ION SO4:SULFATE ION TYR:TYROSINE | |||
4ts1 | [A2] | [A2] | [A2] | 2.5 | TYR:TYROSINE | |||
5dk4 | [A2] | [A2] | [A2] | 1.9 | 5BX:(5S)-5-[(1R)-1-(1H-INDOL-3-YL)ETHYL]-2-(METHYLAMINO)-1,3-OXAZOL-4(5H)-ONE ATP:ADENOSINE-5___sq___-TRIPHOSPHATE GOL:GLYCEROL MG:MAGNESIUM ION MSE:SELENOMETHIONINE | |||
5ekd | [A2] | [A2] | [A2] | 1.82 | 5BX:(5S)-5-[(1R)-1-(1H-INDOL-3-YL)ETHYL]-2-(METHYLAMINO)-1,3-OXAZOL-4(5H)-ONE ATP:ADENOSINE-5___sq___-TRIPHOSPHATE GOL:GLYCEROL MN:MANGANESE (II) ION | |||
5ihx | [A2] | [A2] | [A2] | 2.3 | TYR:TYROSINE | |||
5ijx | [A2] | [A2] | [A2] | 2.63 | MSE:SELENOMETHIONINE TYR:TYROSINE | |||
5l7p | ![]() | [A2] | [A2] | [A2] | 1.9 | 1PE:PENTAETHYLENE GLYCOL BUU:(2~{S})-2-AZANYL-3-[3-[(2-NITROPHENYL)METHOXY]-4-OXIDANYL-PHENYL]PROPANOIC ACID CA:CALCIUM ION CL:CHLORIDE ION | ||
5n5u | ![]() | [A2] | [A2] | [A2] | 1.6 | 7N8:4-BORONO-L-PHENYLALANINE AMP:ADENOSINE MONOPHOSPHATE CL:CHLORIDE ION | ||
5n5v | ![]() | [A2] | [A2] | [A2] | 2.3 | CL:CHLORIDE ION | ||
5nsf | [A2] | [A2] | [A2] | 2.43 | 96Z:(2~{S})-2-AZANYL-3-(2,6-DIHYDROAZULEN-1-YL)PROPANOICACID CA:CALCIUM ION GOL:GLYCEROL PG4:TETRAETHYLENE GLYCOL | |||
5tev | [A] | [A] | [A] | 2.25 | ||||
5tew | [A] | [A] | [A] | 2.5 | SO4:SULFATE ION TRP:TRYPTOPHAN | |||
5thh | ![]() | [A2] | [A2] | [A2] | 1.96 | TYR:TYROSINE | ||
5thl | ![]() | [A2] | [A2] | [A2] | 1.6 | |||
5u36 | ![]() | [A2] | [A2] | [A2] | 3.03 | |||
5uji | ![]() | [A2] | [A2] | [A2] | 2.79 | |||
5ujj | [A2] | [A2] | [A2] | 2.1 | MG:MAGNESIUM ION TYM:TRYPTOPHANYL-5___sq___AMP | |||
5usf | [AB] | [AB] | [AB] | 2.75 | YSA:5___sq___-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE | |||
6mtk | [A2] | [A2] | [A2] | 2 | ||||
6ncr | [A] | [A] | [A] | 1.75 | ACT:ACETATE ION CA:CALCIUM ION EDO:1,2-ETHANEDIOL TRP:TRYPTOPHAN |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA