- Class: 1
- Architecture: 1.10:Orthogonal Bundle
- Topology: 1.10.840:Son of Sevenless (SoS) protein
- Homology: 1.10.840.10:Ras guanine-nucleotide exchange factors catalytic domain
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1bkd | ![]() | [A4B4] | [A4B4] | [A4B4] | 2.8 | |||
1nvu | ![]() | [A2B] | [A2B] | [A2B] | 2.2 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION | ||
1nvv | ![]() | [ABC] | [A2B] | [A2B] | 2.18 | GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION PO4:PHOSPHATE ION | ||
1nvw | [A2B] | [A2B] | [A2B] | 2.7 | GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION PO4:PHOSPHATE ION | |||
1nvx | ![]() | [A2B] | [A2B] | [A2B] | 3.2 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION | ||
1xd2 | ![]() | [ABC] | [A2B] | [A2B] | 2.7 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION | ||
1xd4 | ![]() | [A] | [A] | [A] | 3.64 | |||
2byv | [A] | [A] | [A] | 2.7 | ||||
2ii0 | [A] | [A] | [A] | 2.02 | ||||
2ije | [A] | [A] | [A] | 2.2 | GOL:GLYCEROL | |||
3cf6 | [A2B2] | [A2B2] | [A2B2] | 2.2 | SO4:SULFATE ION SP1:6-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL | |||
3ksy | ![]() | [A] | [A] | [A] | 3.18 | |||
3qxl | [A] | [A] | [A] | 2.24 | ||||
3t6a | ![]() | [A] | [A] | [A] | 2.4 | POG:(20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL UNX:UNKNOWN ATOM OR ION | ||
3t6g | ![]() | [AB] | [AB] | [AB] | 2.5 | ACT:ACETATE ION | ||
4f7z | ![]() | [A] | [A] | [A] | 2.6 | GOL:GLYCEROL | ||
4jgw | [A] | [A] | [A] | 2.3 | ||||
4l9m | ![]() | [A2] | [A2] | [A2] | 3 | CIT:CITRIC ACID GOL:GLYCEROL ZN:ZINC ION | ||
4mgi | [AB] | [AB] | [AB] | 2.8 | CMP:ADENOSINE-3___sq___,5___sq___-CYCLIC-MONOPHOSPHATE SO4:SULFATE ION | |||
4mgk | ![]() | [AB] | [AB] | [AB] | 2.7 | CMP:ADENOSINE-3___sq___,5___sq___-CYCLIC-MONOPHOSPHATE SO4:SULFATE ION | ||
4mgy | ![]() | [AB] | [AB] | [AB] | 2.6 | H07:(2S,4AR,6R,7R,7AR)-6-{6-AMINO-8-[(4-CHLOROPHENYL)SULFANYL]-9H-PURIN-9-YL}-7-METHOXYTETRAHYDRO-4H-FURO[3,2-D][1,3,2]DIOXAPHOSPHININ-2-OL 2-OXIDE SO4:SULFATE ION | ||
4mgz | [AB] | [AB] | [AB] | 3 | HR6:(2S,4AR,6R,7R,7AS)-6-[6-AMINO-8-(BENZYLSULFANYL)-9H-PURIN-9-YL]-2-SULFANYLTETRAHYDRO-4H-FURO[3,2-D][1,3,2]DIOXAPHOSPHININ-7-OL 2-OXIDE SO4:SULFATE ION | |||
4mh0 | [AB] | [AB] | [AB] | 2.4 | HR4:(2S,4AR,6R,7R,7AS)-6-{6-AMINO-8-[(4-FLUOROBENZYL)SULFANYL]-9H-PURIN-9-YL}-2-SULFANYLTETRAHYDRO-4H-FURO[3,2-D][1,3,2]DIOXAPHOSPHININ-7-OL 2-OXIDE SO4:SULFATE ION | |||
4nyi | ![]() | [ABC] | [A2B] | [A2B] | 2.96 | 2PX:N-{1-[(5-METHYL-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-L-TRYPTOPHANAMIDE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | ||
4nyj | ![]() | [ABC] | [A2B] | [A2B] | 2.85 | 2PZ:N-[1-(1H-INDOL-3-YLMETHYL)PIPERIDIN-4-YL]GLYCINAMIDE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | ||
4nym | ![]() | [ABC] | [ABC] | [A2B] | 3.55 | GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION RND:N-[1-(1H-INDOL-3-YLMETHYL)PIPERIDIN-4-YL]-L-TRYPTOPHANAMIDE | ||
4uru | [AB] | [AB] | [AB] | 2.83 | 6W2:4-METHOXY-N-(1,3-THIAZOL-2-YL)BENZENESULFONAMIDE | |||
4urv | [AB] | [AB] | [AB] | 2.58 | FMT:FORMIC ACID UMK:4-(4-BROMOPHENYL)PIPERIDIN-4-OL | |||
4urw | [AB] | [AB] | [AB] | 2.76 | DXO:2-(2,6-DIMETHYLPHENYL)-4-(METHYLSULFANYL)-6-(PIPERAZIN-1-YL)-1,3,5-TRIAZINE | |||
4urx | [AB] | [AB] | [AB] | 2.49 | FK1:6-BROMO-1H-INDOLE FMT:FORMIC ACID HXY:1-(4-BROMOBENZYL)PYRROLIDINE | |||
4ury | [AB] | [AB] | [AB] | 2.47 | RV1:N-[(4-AMINOPHENYL)SULFONYL]CYCLOPROPANECARBOXAMIDE | |||
4urz | [AB] | [AB] | [AB] | 2.24 | VJP:1-[(4-AMINOPHENYL)SULFONYL]PIPERIDIN-2-ONE | |||
4us0 | [AB] | [AB] | [AB] | 2.17 | NEQ:N-ETHYLMALEIMIDE | |||
4us1 | [AB] | [AB] | [AB] | 2.65 | L71:(3S)-3-[3-(AMINOMETHYL)PHENYL]-1-ETHYLPYRROLIDINE-2,5-DIONE | |||
4us2 | [AB] | [AB] | [AB] | 2.48 | L7S:3-[(3R)-1-ETHYL-2,5-DIOXOPYRROLIDIN-3-YL]BENZAMIDE | |||
5cm8 | [AB] | [AB] | [AB] | 2.6 | ||||
5cm9 | [AB] | [AB] | [AB] | 2.6 | ||||
5ovd | ![]() | [A] | [A] | [A] | 1.9 | EDO:1,2-ETHANEDIOL | ||
5ove | ![]() | [A] | [A] | [A] | 1.85 | AXE:6,7-DIMETHOXY-~{N}-[(1~{R})-1-NAPHTHALEN-1-YLETHYL]QUINAZOLIN-4-AMINE EDO:1,2-ETHANEDIOL | ||
5ovf | ![]() | [A] | [A] | [A] | 2.01 | AWT:6,7-DIMETHOXY-2-METHYL-~{N}-[(1~{R})-1-[3-(1~{H}-PYRAZOL-4-YL)PHENYL]ETHYL]QUINAZOLIN-4-AMINE EDO:1,2-ETHANEDIOL | ||
5ovg | ![]() | [A] | [A] | [A] | 2.3 | AWZ:~{N}-[(1~{R})-1-[5-(6,7-DIHYDRO-5~{H}-PYRROLO[1,2-A]IMIDAZOL-3-YL)THIOPHEN-2-YL]ETHYL]-6,7-DIMETHOXY-2-METHYL-QUINAZOLIN-4-AMINE EDO:1,2-ETHANEDIOL | ||
5ovh | ![]() | [A] | [A] | [A] | 2.3 | AWW:[2-[5-[(1~{R})-1-[(6,7-DIMETHOXY-2-METHYL-5,8-DIHYDROQUINAZOLIN-4-YL)AMINO]ETHYL]THIOPHEN-2-YL]PHENYL]METHANOL EDO:1,2-ETHANEDIOL | ||
5ovi | ![]() | [A] | [A] | [A] | 2.2 | AXH:6,7-DIMETHOXY-2-METHYL-~{N}-[(1~{R})-1-[4-[2-(METHYLAMINOMETHYL)PHENYL]THIOPHEN-2-YL]ETHYL]QUINAZOLIN-4-AMINE EDO:1,2-ETHANEDIOL | ||
5wfo | [A2B] | [A2B] | [A2B] | 1.99 | 5UU:6-CHLORANYL-~{N}-(4-FLUOROPHENYL)-1,2,3,4-TETRAHYDROACRIDIN-9-AMINE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | |||
5wfp | [A2B] | [A2B] | [A2B] | 2.08 | 5UX:6-CHLORANYL-~{N}-(3-CHLORANYL-4-FLUORANYL-PHENYL)-1,2,3,4-TETRAHYDROACRIDIN-9-AMINE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | |||
5wfq | [A2B] | [A2B] | [A2B] | 2.26 | 5UV:7-CHLORANYL-~{N}-(3-CHLORANYL-4-FLUORANYL-PHENYL)-1,2,3,4-TETRAHYDROACRIDIN-9-AMINE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | |||
5wfr | [A2B] | [A2B] | [A2B] | 2.46 | 5UW:~{N}-(3,3-DIPHENYLPROPYL)PIPERIDIN-4-AMINE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | |||
6axg | [AB] | [AB] | [AB] | 3.3 | ||||
6bvi | ![]() | [ABC] | [ABC] | [A2B] | 1.75 | CSO:S-HYDROXYCYSTEINE EC4:6-CHLORO-N-{1-[(5-CHLORO-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-L-TRYPTOPHANAMIDE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6bvj | [ABC] | [ABC] | [A2B] | 1.75 | CSO:S-HYDROXYCYSTEINE EAS:5-CHLORO-N-{1-[(5-CHLORO-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-L-TRYPTOPHANAMIDE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | |||
6bvk | ![]() | [ABC] | [ABC] | [A2B] | 1.8 | CSO:S-HYDROXYCYSTEINE EAV:N-{1-[(5-CHLORO-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-6-METHYL-L-TRYPTOPHANAMIDE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6bvl | ![]() | [ABC] | [ABC] | [A2B] | 1.75 | CSO:S-HYDROXYCYSTEINE EBY:N-{1-[(5-CHLORO-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-5-METHYL-L-TRYPTOPHANAMIDE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6bvm | ![]() | [ABC] | [ABC] | [A2B] | 1.8 | CSO:S-HYDROXYCYSTEINE EBV:(2S)-2-AMINO-1-[(3AR,6AS)-5-[(5-CHLORO-1H-INDOL-3-YL)METHYL]HEXAHYDROPYRROLO[3,4-C]PYRROL-2(1H)-YL]-3-(1H-INDOL-3-YL)PROPAN-1-ONE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6cuo | ![]() | [ABC] | [ABC] | [A2B] | 1.73 | CSO:S-HYDROXYCYSTEINE FFS:N~2~-(3-CHLOROPHENYL)-N~4~-[(FURAN-2-YL)METHYL]QUINAZOLINE-2,4-DIAMINE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6cup | ![]() | [ABC] | [ABC] | [A2B] | 1.83 | CSO:S-HYDROXYCYSTEINE FFV:N~2~-(3-CHLORO-4-FLUOROPHENYL)-N~4~-[(1R)-1-CYCLOPROPYLETHYL]QUINAZOLINE-2,4-DIAMINE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6cur | ![]() | [ABC] | [ABC] | [A2B] | 1.73 | CSO:S-HYDROXYCYSTEINE FFY:N~2~-(3-CHLORO-4-FLUOROPHENYL)-N~4~-[(1R)-1-CYCLOPROPYLETHYL]-8-(1,2,3,6-TETRAHYDROPYRIDIN-4-YL)QUINAZOLINE-2,4-DIAMINE FMT:FORMIC ACID GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6d55 | ![]() | [ABC] | [ABC] | [A2B] | 1.68 | CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FWA:6-CHLORO-2-(2,6-DIAZASPIRO[3.3]HEPTAN-2-YL)-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-4-(4-METHYLPIPERAZIN-1-YL)-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6d56 | ![]() | [ABC] | [ABC] | [A2B] | 1.68 | CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FVM:6-CHLORO-2-(2,6-DIAZASPIRO[3.3]HEPTAN-2-YL)-4-(3,5-DIMETHYL-1H-PYRAZOL-4-YL)-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6d59 | ![]() | [ABC] | [ABC] | [A2B] | 1.7 | CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FVJ:6-CHLORO-4-(3,5-DIMETHYL-1H-PYRAZOL-4-YL)-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6d5e | ![]() | [ABC] | [ABC] | [A2B] | 1.75 | CL:CHLORIDE ION CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FVG:1-[(2S)-1-{6-CHLORO-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-1H-BENZIMIDAZOL-4-YL}PYRROLIDIN-2-YL]METHANAMINE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6d5g | ![]() | [ABC] | [ABC] | [A2B] | 1.92 | BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FVD:6-CHLORO-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-4-(1,2,3,6-TETRAHYDROPYRIDIN-4-YL)-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION | ||
6d5h | ![]() | [ABC] | [ABC] | [A2B] | 1.8 | CL:CHLORIDE ION CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FV7:6-CHLORO-4-(2-CHLOROPHENYL)-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION | ||
6d5j | ![]() | [ABC] | [ABC] | [A2B] | 1.75 | CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FV4:6-CHLORO-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6d5l | ![]() | [ABC] | [ABC] | [A2B] | 1.7 | CSO:S-HYDROXYCYSTEINE FMT:FORMIC ACID FW7:6-CHLORO-1-[(3-CHLORO-4-FLUOROPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION | ||
6d5m | ![]() | [ABC] | [ABC] | [A2B] | 2.08 | FW4:1-[(3-CHLORO-4-FLUOROPHENYL)METHYL]-5,6-DIMETHYL-2-(PIPERAZIN-1-YL)-1H-BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | ||
6d5v | ![]() | [ABC] | [ABC] | [A2B] | 2.04 | FVY:1-[(3-CHLORO-4-FLUOROPHENYL)METHYL]-5,6-DIMETHYL-1H-BENZIMIDAZOL-2-AMINE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | ||
6d5w | ![]() | [ABC] | [A2B] | [A2B] | 2.48 | FVV:10-[(4-FLUOROPHENYL)METHYL]-2,3,4,10-TETRAHYDROPYRIMIDO[1,2-A]BENZIMIDAZOLE GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION | ||
6eie | ![]() | [A] | [A] | [A] | 2.72 | |||
6epl | ![]() | [AB] | [AB] | [AB] | 2.55 | GOL:GLYCEROL | ||
6epm | ![]() | [AB] | [AB] | [AB] | 2.5 | BQ5:(1-PHENYL-5,6-DIHYDRO-4~{H}-CYCLOPENTA[C]PYRAZOL-3-YL)METHANAMINE GOL:GLYCEROL | ||
6epn | ![]() | [AB] | [AB] | [AB] | 2.5 | BQ2:1-(3,4-DIHYDRO-1~{H}-ISOQUINOLIN-2-YL)-2-OXIDANYL-ETHANONE DMS:DIMETHYL SULFOXIDE GOL:GLYCEROL | ||
6epo | ![]() | [AB] | [AB] | [AB] | 2.4 | BPW:3-(4-CHLOROPHENYL)PROPAN-1-AMINE GOL:GLYCEROL | ||
6epp | ![]() | [AB] | [AB] | [AB] | 2.4 | BOQ:ETHYL 2-(AMINOMETHYL)-5-~{TERT}-BUTYL-FURAN-3-CARBOXYLATE GOL:GLYCEROL |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA