- Class: 2
- Architecture: 2.10:Ribbon
- Topology: 2.10.150:Urease, subunit B
- Homology: 2.10.150.10:Urease, beta subunit
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
|---|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
| 1a5k |  | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.2 | |||
| 1a5l | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.2 | |||
| 1a5m | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | |||
| 1a5n | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.4 | FMT:FORMIC ACID NI:NICKEL (II) ION | ||
| 1a5o | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | FMT:FORMIC ACID NI:NICKEL (II) ION | ||
| 1e9y | [A12B12] | [A12B12] | [A12B12] | 3 | HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 1e9z | [A12B12] | [A12B12] | [A12B12] | 3 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 1ef2 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | KCX:LYSINE NZ-CARBOXYLIC ACID MN:MANGANESE (II) ION | |||
| 1ejr | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1ejs | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1ejt | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1eju | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1ejv | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.4 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1ejw | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.9 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 1ejx | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.6 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 1fwa | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | CO3:CARBONATE ION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwb | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwc | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwd | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwe | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwf | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwg | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwh | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwi | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1fwj | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 1ie7 | [ABC] | [ABC] | [ABC] | 1.85 | CXM:N-CARBOXYMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION PO4:PHOSPHATE ION | |||
| 1kra | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.3 | ||||
| 1krb | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | ||
| 1krc | | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.5 | CO2:CARBON DIOXIDE NI:NICKEL (II) ION | ||
| 1s3t | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.1 | BO3:BORIC ACID CXM:N-CARBOXYMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
| 1ubp | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.65 | BME:BETA-MERCAPTOETHANOL CXM:N-CARBOXYMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 2kau | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 2ubp | [ABC] | [ABC] | [ABC] | 2 | ACE:ACETYL GROUP KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
| 3la4 | [A6] | [A6] | [A6] | 2.05 | ACN:ACETONE CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION PO4:PHOSPHATE ION | |||
| 3qga | [A12B12] | [A12B12] | [A12B12] | 3 | FE:FE (III) ION FME:N-FORMYLMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID | |||
| 3qgk | [A12B12] | [A12B12] | [A12B12] | 3 | FE:FE (III) ION FME:N-FORMYLMETHIONINE KCX:LYSINE NZ-CARBOXYLIC ACID | |||
| 3ubp | [ABC] | [ABC] | [ABC] | 2 | 2PA:DIAMIDOPHOSPHATE ACE:ACETYL GROUP KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4ac7 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.5 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL FLC:CITRATE ANION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
| 4ceu | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.58 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
| 4cex | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.59 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL F:FLUORIDE ION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
| 4ep8 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.55 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4epb | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.75 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4epd | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.7 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4epe | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.05 | KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4g7e | [A3B3] | [A3B3] | [A6] | 2.2 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE KCX:LYSINE NZ-CARBOXYLIC ACID MG:MAGNESIUM ION NI:NICKEL (II) ION | |||
| 4goa | [A6] | [A6] | [A6] | 2.2 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE F:FLUORIDE ION KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4gy7 | [A3] | [A3] | [A3] | 1.49 | ACN:ACETONE BME:BETA-MERCAPTOETHANOL CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NA:SODIUM ION NI:NICKEL (II) ION PO4:PHOSPHATE ION | |||
| 4h9m | [A3] | [A3] | [A3] | 1.52 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE EDO:1,2-ETHANEDIOL HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4ubp | [ABC] | [ABC] | [ABC] | 1.55 | ACE:ACETYL GROUP HAE:ACETOHYDROXAMIC ACID KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION | |||
| 4z42 | [A12B12C12] | [A12B12C12] | [A12B12C12] | 3.01 | NI:NICKEL (II) ION | |||
| 5a6t | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.65 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO3:SULFITE ION SO4:SULFATE ION | |||
| 5fsd | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.75 | CXM:N-CARBOXYMETHIONINE DBX:2,5-DIHYDROXYBENZENESULFONIC ACID EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
| 5fse | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.07 | CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL HQE:BENZENE-1,4-DIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
| 5g4h | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.5 | CAQ:CATECHOL CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
| 5ol4 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.28 | 9XN:PHOSPHORAMIDOTHIOIC O,O-ACID CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION SO4:SULFATE ION | |||
| 6g48 | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.91 | AG:SILVER ION CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
| 6i9y | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.14 | AU:GOLD ION CXM:N-CARBOXYMETHIONINE EDO:1,2-ETHANEDIOL KCX:LYSINE NZ-CARBOXYLIC ACID NI:NICKEL (II) ION OH:HYDROXIDE ION SO4:SULFATE ION | |||
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
