- Class: 1
- Architecture: 1.20:Up-down Bundle
- Topology: 1.20.1090:Dehydroquinate synthase-like, alpha domain
- Homology: 1.20.1090.10:Dehydroquinate synthase-like - alpha domain
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1dqs | [A2] | [A2] | [A2] | 1.8 | CL:CHLORIDE ION CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1jpu | [A8] | [A8] | [A8] | 1.8 | ZN:ZINC ION | |||
1jq5 | [A8] | [A8] | [A8] | 1.7 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1jqa | [A8] | [A8] | [A8] | 2.05 | GOL:GLYCEROL ZN:ZINC ION | |||
1kq3 | [A] | [A] | [A] | 1.5 | CL:CHLORIDE ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL ZN:ZINC ION | |||
1nr5 | [A2] | [A2] | [A2] | 2.1 | CL:CHLORIDE ION CO:COBALT (II) ION CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1nrx | [A2] | [A2] | [A2] | 2.9 | CL:CHLORIDE ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1nua | [A2] | [A2] | [A2] | 2.85 | CL:CHLORIDE ION ZN:ZINC ION | |||
1nva | [A2] | [A2] | [A2] | 2.62 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE CL:CHLORIDE ION ZN:ZINC ION | |||
1nvb | [A2] | [A2] | [A2] | 2.7 | CL:CHLORIDE ION CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1nvd | [A2] | [A2] | [A2] | 2.51 | CL:CHLORIDE ION CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID ZN:ZINC ION | |||
1nve | [A2] | [A2] | [A2] | 2.58 | CL:CHLORIDE ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1nvf | [A2] | [A2] | [A2] | 2.8 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE CL:CHLORIDE ION CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID ZN:ZINC ION | |||
1o2d | [A] | [A] | [A] | 1.3 | FE:FE (III) ION MSE:SELENOMETHIONINE NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
1oj7 | [A2] | [A2] | [A2] | 2 | BO3:BORIC ACID CL:CHLORIDE ION NZQ:5,6-DIHYDROXY-NADP ZN:ZINC ION | |||
1rrm | [A2] | [A2] | [A2] | 1.6 | APR:ADENOSINE-5-DIPHOSPHORIBOSE FE2:FE (II) ION MSE:SELENOMETHIONINE PGO:S-1,2-PROPANEDIOL ZN:ZINC ION | |||
1sg6 | [A] | [A] | [A] | 1.7 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1ta9 | [A8] | [A8] | [A8] | 1.9 | ALA:ALANINE GOL:GLYCEROL K:POTASSIUM ION ZN:ZINC ION | |||
1ujn | [A2] | [A2] | [A2] | 1.8 | ||||
1vhd | [A2] | [A2] | [A2] | 1.6 | CAC:CACODYLATE ION MSE:SELENOMETHIONINE NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE ZN:ZINC ION | |||
1vlj | [A2] | [A2] | [A2] | 1.78 | FE:FE (III) ION NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | |||
1xag | [A] | [A] | [A] | 2.45 | CL:CHLORIDE ION CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1xah | [A] | [A] | [A] | 2.2 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1xai | [A] | [A] | [A] | 2.3 | CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID ZN:ZINC ION | |||
1xaj | [A] | [A] | [A] | 2.35 | CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
1xal | [A] | [A] | [A] | 2.8 | CRB:[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
2bi4 | [A2] | [A2] | [A2] | 2.85 | CL:CHLORIDE ION FE:FE (III) ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2bl4 | [A2] | [A2] | [A2] | 2.85 | CL:CHLORIDE ION FE2:FE (II) ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2d2x | [A2] | [A2] | [A2] | 2.3 | CO:COBALT (II) ION GOL:GLYCEROL SO3:SULFITE ION | |||
2gru | [A2] | [A2] | [A2] | 2.15 | CAK:[(1R,2R,3S,4S,5R)-2,3,4,5-TETRAHYDROXYCYCLOHEXYL]METHYL DIHYDROGEN PHOSPHATE CO:COBALT (II) ION EXO:(1R,2S,3S,4R)-5-METHYLENECYCLOHEXANE-1,2,3,4-TETRAOL MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PO4:PHOSPHATE ION SO3:SULFITE ION | |||
3bfj | [A10] | [A10] | [A10] | 2.7 | FE2:FE (II) ION | |||
3ce9 | [A4] | [A4] | [A4] | 2.37 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE PEG:DI(HYDROXYETHYL)ETHER ZN:ZINC ION | |||
3clh | [A2] | [A2] | [A2] | 2.4 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
3hl0 | [A2] | [A2] | [A2] | 1.6 | CA:CALCIUM ION EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID MSE:SELENOMETHIONINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3iv7 | [A2] | [A2] | [A2] | 2.07 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE PEG:DI(HYDROXYETHYL)ETHER | |||
3jzd | [A2] | [A2] | [A2] | 2.1 | CA:CALCIUM ION CL:CHLORIDE ION GOL:GLYCEROL MSE:SELENOMETHIONINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE P6G:HEXAETHYLENE GLYCOL PEG:DI(HYDROXYETHYL)ETHER PG4:TETRAETHYLENE GLYCOL PGE:TRIETHYLENE GLYCOL | |||
3okf | [A2] | [A2] | [A2] | 2.5 | CL:CHLORIDE ION NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PO4:PHOSPHATE ION | |||
3owo | [A2] | [A2] | [A2] | 2.07 | FE2:FE (II) ION | |||
3ox4 | [A2] | [A2] | [A2] | 2 | FE2:FE (II) ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3qbd | [A2] | [A2] | [A2] | 2.47 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3qbe | [A] | [A] | [A] | 2.07 | CL:CHLORIDE ION ZN:ZINC ION | |||
3rf7 | [A2] | [A2] | [A2] | 2.12 | CA:CALCIUM ION CL:CHLORIDE ION EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID FE:FE (III) ION MSE:SELENOMETHIONINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE NI:NICKEL (II) ION PEG:DI(HYDROXYETHYL)ETHER UNL:UNKNOWN LIGAND | |||
3uhj | [A4] | [A4] | [A4] | 2.34 | GOL:GLYCEROL MSE:SELENOMETHIONINE SE:SELENIUM ATOM ZN:ZINC ION | |||
3w5s | [A2] | [A2] | [A2] | 1.49 | BEN:BENZAMIDINE GOL:GLYCEROL SO4:SULFATE ION | |||
3zdr | [A2] | [A2] | [A2] | 2.504 | CSO:S-HYDROXYCYSTEINE GOL:GLYCEROL SO4:SULFATE ION ZN:ZINC ION | |||
3zok | [A2] | [A2] | [A2] | 2.4 | 2PE:NONAETHYLENE GLYCOL GLY:GLYCINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PEG:DI(HYDROXYETHYL)ETHER PG4:TETRAETHYLENE GLYCOL PGE:TRIETHYLENE GLYCOL PO4:PHOSPHATE ION | |||
4fr2 | [A2] | [A2] | [A2] | 3.2 | NI:NICKEL (II) ION | |||
4mca | [A16] | [A16] | [A16] | 1.9 | GOL:GLYCEROL NA:SODIUM ION ZN:ZINC ION | |||
4p53 | [A2] | [A2] | [A2] | 2.1 | NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PEG:DI(HYDROXYETHYL)ETHER ZN:ZINC ION | |||
4qgs | [A] | [A] | [A] | 1.7 | CL:CHLORIDE ION ZN:ZINC ION | |||
4rfl | [A2] | [A2] | [A2] | 2.2 | EDO:1,2-ETHANEDIOL K:POTASSIUM ION NA:SODIUM ION NDP:NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE ZN:ZINC ION | |||
4rgq | [A2] | [A2] | [A2] | 2.23 | 13P:1,3-DIHYDROXYACETONEPHOSPHATE 1GP:SN-GLYCEROL-1-PHOSPHATE EDO:1,2-ETHANEDIOL K:POTASSIUM ION NDP:NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE ZN:ZINC ION | |||
4rgv | [A2] | [A2] | [A2] | 2.45 | MG:MAGNESIUM ION ZN:ZINC ION | |||
5br4 | [A2] | [A2] | [A2] | 0.91 | CL:CHLORIDE ION GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION | |||
5eks | [A] | [A] | [A] | 1.85 | MG:MAGNESIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
5fb3 | [A6] | [A6] | [A6] | 2.45 | NDP:NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE PPV:PYROPHOSPHATE SO4:SULFATE ION ZN:ZINC ION | |||
5hvn | [A2] | [A2] | [A2] | 3 | CL:CHLORIDE ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
5k8c | [A2] | [A2] | [A2] | 1.85 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PO4:PHOSPHATE ION ZN:ZINC ION | |||
5tpr | [A2] | [A2] | [A2] | 1.7 | GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION ZN:ZINC ION | |||
5xn8 | [A8] | [A8] | [A8] | 2.33 | GOL:GLYCEROL ZN:ZINC ION | |||
5zxl | [A4] | [A4] | [A4] | 2.79 | CL:CHLORIDE ION GOL:GLYCEROL SO4:SULFATE ION ZN:ZINC ION | |||
6c5c | [A2] | [A2] | [A2] | 1.85 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
6c75 | [A2] | [A2] | [A2] | 2.4 | ATR:2___sq___-MONOPHOSPHOADENOSINE-5___sq___-DIPHOSPHATE FE:FE (III) ION NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | |||
6c76 | [A2] | [A2] | [A2] | 2.1 | ACY:ACETIC ACID FE:FE (III) ION NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE PGE:TRIETHYLENE GLYCOL | |||
6c7l | [A2] | [A2] | [A2] | 1.91 | ATR:2___sq___-MONOPHOSPHOADENOSINE-5___sq___-DIPHOSPHATE EDO:1,2-ETHANEDIOL MPD:(4S)-2-METHYL-2,4-PENTANEDIOL PO4:PHOSPHATE ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA