[AB]
- Classes: Alpha and beta proteins (a+b)
- Folds: GFP-like
- Superfamilies: GFP-like
- Families: Fluorescent proteins
- Protein Domains: automated matches
- Species: Jellyfish (Aequorea victoria) [TaxId: 6100]
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
| 1w7s |  |
[A4] | [A4] | [A4] | 1.85 | GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | |
| 1w7t | |
[A4] | [A4] | [A4] | 1.85 | ABA:ALPHA-AMINOBUTYRIC ACID GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | |
| 1w7u | |
[A8] | [A8] | [A8] | 1.85 | ABA:ALPHA-AMINOBUTYRIC ACID GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | |
| 1yhg | |
[A] | [A] | [A] | 2.5 | ||
| 1yhh | |
[A] | [A] | [A] | 1.5 | ||
| 1yhi | |
[A] | [A] | [A] | 1.9 | ||
| 1yj2 | |
[A] | [A] | [A] | 1.5 | CRX:[2-(1-AMINOETHYL)-2-HYDROXY-4-METHYLENE-5-OXOIMIDAZOLIDIN-1-YL]ACETIC ACID EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION | |
| 1yjf | |
[A] | [A] | [A] | 1.35 | MDO:{2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID MG:MAGNESIUM ION | |
| 1z1p | |
[A] | [A] | [A] | 2 | CR0:[2-(1-AMINO-2-HYDROXYPROPYL)-2-HYDROXY-4-ISOBUTYL-5-OXO-2,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE | |
| 1z1q | |
[A] | [A] | [A] | 1.5 | CR0:[2-(1-AMINO-2-HYDROXYPROPYL)-2-HYDROXY-4-ISOBUTYL-5-OXO-2,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE NA:SODIUM ION | |
| 2b3p | |
[A] | [A] | [A] | 1.4 | ACY:ACETIC ACID CD:CADMIUM ION CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 2b3q | |
[A2] | [A2] | [A2] | 2.3 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID MG:MAGNESIUM ION | |
| 2due | |
[A] | [A] | [A] | 1.24 | C12:2-(1-AMINO-2-HYDROXYPROPYL)-4-(4-HYDROXYBENZYL)-1-(2-OXOETHYL)-1H-IMIDAZOL-5-OLATE | |
| 2duf | |
[A] | [A] | [A] | 1.5 | C12:2-(1-AMINO-2-HYDROXYPROPYL)-4-(4-HYDROXYBENZYL)-1-(2-OXOETHYL)-1H-IMIDAZOL-5-OLATE | |
| 2dug | |
[A] | [A] | [A] | 1.4 | C12:2-(1-AMINO-2-HYDROXYPROPYL)-4-(4-HYDROXYBENZYL)-1-(2-OXOETHYL)-1H-IMIDAZOL-5-OLATE | |
| 2duh | |
[A] | [A] | [A] | 1.2 | C12:2-(1-AMINO-2-HYDROXYPROPYL)-4-(4-HYDROXYBENZYL)-1-(2-OXOETHYL)-1H-IMIDAZOL-5-OLATE | |
| 2dui | |
[A] | [A] | [A] | 1.36 | GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | |
| 2hqz | |
[A] | [A] | [A] | 1.2 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION | |
| 2q57 | |
[A] | [A] | [A] | 2 | CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | |
| 2wsn | [A] | [A] | [A] | 1.37 | CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | ||
| 2wso | [A] | [A] | [A] | 1.15 | CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | ||
| 2wur | |
[A] | [A] | [A] | 0.9 | EOH:ETHANOL GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID IPA:ISOPROPYL ALCOHOL | |
| 2y0g | |
[A] | [A] | [A] | 1.5 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 2ydz | |
[A] | [A] | [A] | 1.59 | CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | |
| 2ye0 | |
[A] | [A] | [A] | 1.47 | SWG:2-[(4Z)-2-[(1R)-1-AMINO-2-HYDROXY-ETHYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-IMIDAZOL-1-YL]ETHANOIC ACID | |
| 2ye1 | |
[A] | [A] | [A] | 1.63 | MG:MAGNESIUM ION SWG:2-[(4Z)-2-[(1R)-1-AMINO-2-HYDROXY-ETHYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-IMIDAZOL-1-YL]ETHANOIC ACID | |
| 3ed8 | |
[A] | [A] | [A] | 2.7 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 3st2 | [A] | [A] | [A] | 1.9 | CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID PO4:PHOSPHATE ION | ||
| 3st3 | [A] | [A] | [A] | 1.7 | PO4:PHOSPHATE ION WCR:[(2R,4Z)-2-(AMINOMETHYL)-2-HYDROXY-4-(4-HYDROXYBENZYLIDENE)-5-OXOIMIDAZOLIDIN-1-YL]ACETIC ACID | ||
| 3st4 | [A] | [A] | [A] | 2 | CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID PO4:PHOSPHATE ION | ||
| 3ztf | |
[A] | [A] | [A] | 1.31 | SWG:2-[(4Z)-2-[(1R)-1-AMINO-2-HYDROXY-ETHYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-IMIDAZOL-1-YL]ETHANOIC ACID | |
| 4ar7 | |
[A] | [A] | [A] | 1.23 | SWG:2-[(4Z)-2-[(1R)-1-AMINO-2-HYDROXY-ETHYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-IMIDAZOL-1-YL]ETHANOIC ACID | |
| 4as8 | |
[A] | [A] | [A] | 1.02 | CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION | |
| 4b5y | |
[A] | [A] | [A] | 1.45 | SWG:2-[(4Z)-2-[(1R)-1-AMINO-2-HYDROXY-ETHYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-IMIDAZOL-1-YL]ETHANOIC ACID | |
| 4bdu | |
|
[A4] | [A4] | [A4] | 3 | CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID |
| 5yr3 | [A] | [A] | [A] | 1.9 | BF6:[(4Z)-2-(AMINOMETHYL)-4-{[4-(BENZENECARBONYL)PHENYL]METHYLIDENE}-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | ||
| 6dq0 | [A] | [A] | [A] | 2.05 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID EDO:1,2-ETHANEDIOL NA:SODIUM ION PPN:PARA-NITROPHENYLALANINE | ||
| 6dq1 | |
[A] | [A] | [A] | 1.6 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID NA:SODIUM ION PPN:PARA-NITROPHENYLALANINE | |
| 6l02 | |
[A] | [A] | [A] | 1.8 | BF6:[(4Z)-2-(AMINOMETHYL)-4-{[4-(BENZENECARBONYL)PHENYL]METHYLIDENE}-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID | |
| 6lr7 | [AB] | [AB] | [AB] | 1.67 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | ||
| 6pfr | [A] | [A] | [A] | 1.51 | OHD:{(4Z)-2-[(1S)-1-AMINOETHYL]-4-[(3-CHLORO-4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | ||
| 6pfs | [A] | [A] | [A] | 1.76 | OHD:{(4Z)-2-[(1S)-1-AMINOETHYL]-4-[(3-CHLORO-4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID SO4:SULFATE ION | ||
| 6pft | [A] | [A] | [A] | 1.45 | OHD:{(4Z)-2-[(1S)-1-AMINOETHYL]-4-[(3-CHLORO-4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID SO4:SULFATE ION | ||
| 6pfu | [A] | [A] | [A] | 1.62 | OHD:{(4Z)-2-[(1S)-1-AMINOETHYL]-4-[(3-CHLORO-4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID SO4:SULFATE ION | ||
| 6uhj | |
[A] | [A] | [A] | 1.5 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 6uhk | |
[A] | [A] | [A] | 1.9 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 6uhl | |
[A] | [A] | [A] | 1.91 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID UNL:UNKNOWN LIGAND | |
| 6uhm | |
[A] | [A] | [A] | 2.1 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 6uhn | |
[A] | [A] | [A] | 1.92 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID UNL:UNKNOWN LIGAND | |
| 6uho | |
[A] | [A] | [A] | 1.95 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID UNL:UNKNOWN LIGAND | |
| 6uhp | |
[A] | [A] | [A] | 2.9 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 6uhq | |
[A] | [A] | [A] | 2.85 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID UNL:UNKNOWN LIGAND | |
| 6uhr | |
[A] | [A] | [A] | 3 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | |
| 6xzf | [A] | [A] | [A] | 1.8 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID TB:TERBIUM(III) ION | ||
| 7a7w | [A] | [A] | [A] | 1.3 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID | ||
| 7a7y | [A] | [A] | [A] | 0.97 | CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID NO3:NITRATE ION | ||
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
