[AB]
- Classes: Multi-domain proteins (alpha and beta)
- Folds: HydB/Nqo4-like
- Superfamilies: HydB/Nqo4-like
- Families: Nickel-iron hydrogenase, large subunit
- Protein Domains: automated matches
- Species: Desulfovibrio vulgaris [TaxId: 882]
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
| 2wpn | [AB] | [AB] | [AB] | 2.04 | CL:CHLORIDE ION FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION FSX:BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) NI:NICKEL (II) ION OCS:CYSTEINESULFONIC ACID PSW:3-(SULFANYLSELANYL)-L-ALANINE SBY:3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE SF4:IRON/SULFUR CLUSTER | ||
| 3ze6 | [AB] | [AB] | [AB] | 1.5 | CL:CHLORIDE ION CSS:S-MERCAPTOCYSTEINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION FSX:BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) GOL:GLYCEROL NI:NICKEL (II) ION OCS:CYSTEINESULFONIC ACID PSW:3-(SULFANYLSELANYL)-L-ALANINE SBY:3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE SF4:IRON/SULFUR CLUSTER | ||
| 3ze7 | [AB] | [AB] | [AB] | 1.95 | FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION H2S:HYDROSULFURIC ACID NI:NICKEL (II) ION OCS:CYSTEINESULFONIC ACID SF4:IRON/SULFUR CLUSTER | ||
| 3ze8 | [AB] | [AB] | [AB] | 1.8 | C15:N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE CL:CHLORIDE ION FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION NI:NICKEL (II) ION OCS:CYSTEINESULFONIC ACID PSW:3-(SULFANYLSELANYL)-L-ALANINE SF4:IRON/SULFUR CLUSTER | ||
| 3ze9 | [AB] | [AB] | [AB] | 1.33 | CL:CHLORIDE ION CSS:S-MERCAPTOCYSTEINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION FSX:BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) NI:NICKEL (II) ION OCS:CYSTEINESULFONIC ACID PSW:3-(SULFANYLSELANYL)-L-ALANINE SF4:IRON/SULFUR CLUSTER | ||
| 3zea | [AB] | [AB] | [AB] | 1.82 | FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION H2S:HYDROSULFURIC ACID NI:NICKEL (II) ION OCS:CYSTEINESULFONIC ACID PSW:3-(SULFANYLSELANYL)-L-ALANINE SF4:IRON/SULFUR CLUSTER | ||
| 6z7r | [AB] | [AB] | [AB] | 1.77 | 6ML:OXYGEN-DAMAGED SF4 CL:CHLORIDE ION CSD:3-SULFINOALANINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION H2S:HYDROSULFURIC ACID KR:KRYPTON NI:NICKEL (II) ION SF4:IRON/SULFUR CLUSTER | ||
| 6z8j | [AB] | [AB] | [AB] | 1.09 | 6ML:OXYGEN-DAMAGED SF4 CL:CHLORIDE ION CSD:3-SULFINOALANINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION GOL:GLYCEROL H2S:HYDROSULFURIC ACID NI:NICKEL (II) ION OXY:OXYGEN MOLECULE SF4:IRON/SULFUR CLUSTER | ||
| 6z8m |  |
[AB] | [AB] | [AB] | 1.02 | 6ML:OXYGEN-DAMAGED SF4 CL:CHLORIDE ION CSD:3-SULFINOALANINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION GOL:GLYCEROL H2S:HYDROSULFURIC ACID NI:NICKEL (II) ION OXY:OXYGEN MOLECULE SF4:IRON/SULFUR CLUSTER | |
| 6z8o | |
[AB] | [AB] | [AB] | 2.2 | 6ML:OXYGEN-DAMAGED SF4 CL:CHLORIDE ION FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION H2S:HYDROSULFURIC ACID KR:KRYPTON NI:NICKEL (II) ION SF4:IRON/SULFUR CLUSTER | |
| 6z9g | |
[AB] | [AB] | [AB] | 1.76 | 6ML:OXYGEN-DAMAGED SF4 CL:CHLORIDE ION CSD:3-SULFINOALANINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION H2S:HYDROSULFURIC ACID NI:NICKEL (II) ION OCS:CYSTEINESULFONIC ACID SF4:IRON/SULFUR CLUSTER | |
| 6z9o | |
[AB] | [AB] | [AB] | 1.53 | 6ML:OXYGEN-DAMAGED SF4 CSD:3-SULFINOALANINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION GOL:GLYCEROL H2S:HYDROSULFURIC ACID NI:NICKEL (II) ION OXY:OXYGEN MOLECULE SF4:IRON/SULFUR CLUSTER | |
| 6za1 | |
[AB] | [AB] | [AB] | 1.37 | 6ML:OXYGEN-DAMAGED SF4 CSD:3-SULFINOALANINE FCO:CARBONMONOXIDE-(DICYANO) IRON FE2:FE (II) ION GOL:GLYCEROL H2S:HYDROSULFURIC ACID NI:NICKEL (II) ION OXY:OXYGEN MOLECULE SF4:IRON/SULFUR CLUSTER | |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
