[AB]
- Classes: Multi-domain proteins (alpha and beta)
- Folds: HydB/Nqo4-like
- Superfamilies: HydB/Nqo4-like
- Families: Nickel-iron hydrogenase, large subunit
- Protein Domains: automated matches
- Species: Desulfovibrio vulgaris [TaxId: 883]
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
| 1wuh | [AB] | [AB] | [AB] | 1.24 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NFC:NI-FE ACTIVE CENTER A-FORM SF4:IRON/SULFUR CLUSTER | ||
| 1wui | [AB] | [AB] | [AB] | 1.04 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NFC:NI-FE ACTIVE CENTER A-FORM SF4:IRON/SULFUR CLUSTER | ||
| 1wuj | [AB] | [AB] | [AB] | 1.4 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION NFO:NI-FE OXIDIZED ACTIVE CENTER SF4:IRON/SULFUR CLUSTER | ||
| 1wuk | [AB] | [AB] | [AB] | 1.1 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NFO:NI-FE OXIDIZED ACTIVE CENTER SF4:IRON/SULFUR CLUSTER | ||
| 1wul | [AB] | [AB] | [AB] | 1.5 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NFR:NI-FE REDUCED ACTIVE CENTER SF4:IRON/SULFUR CLUSTER | ||
| 4u9h | [AB] | [AB] | [AB] | 0.89 | F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NWN:HYDRIDO[HYDRIDONICKEL(2+)]BIS(HYDROCYANATO-1KAPPAC)(HYDROXYMETHYL)IRON SF4:IRON/SULFUR CLUSTER TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
| 4u9i | [AB] | [AB] | [AB] | 1.06 | F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NWN:HYDRIDO[HYDRIDONICKEL(2+)]BIS(HYDROCYANATO-1KAPPAC)(HYDROXYMETHYL)IRON SF4:IRON/SULFUR CLUSTER TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
| 5xle | [AB] | [AB] | [AB] | 1.69 | F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NFU:FORMYL[BIS(HYDROCYANATO-1KAPPAC)]IRONNICKEL(FE-NI) SF4:IRON/SULFUR CLUSTER TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
| 5xlf | [AB] | [AB] | [AB] | 1.71 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NFV:NI-FE OXIDIZED ACTIVE CENTER SF4:IRON/SULFUR CLUSTER | ||
| 5xlg | [AB] | [AB] | [AB] | 1.64 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NFV:NI-FE OXIDIZED ACTIVE CENTER SF4:IRON/SULFUR CLUSTER TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
| 5xlh | [AB] | [AB] | [AB] | 1.93 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NFV:NI-FE OXIDIZED ACTIVE CENTER SF4:IRON/SULFUR CLUSTER | ||
| 5y4n | [AB] | [AB] | [AB] | 1.69 | CSO:S-HYDROXYCYSTEINE F3S:FE3-S4 CLUSTER MG:MAGNESIUM ION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NFU:FORMYL[BIS(HYDROCYANATO-1KAPPAC)]IRONNICKEL(FE-NI) SF4:IRON/SULFUR CLUSTER TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
