Number of Protein Chains:12
- Classes: Alpha and beta proteins (a/b)
- Folds: Restriction endonuclease-like
- Superfamilies: Eukaryotic RPB5 N-terminal domain
- Families: Eukaryotic RPB5 N-terminal domain
- Protein Domains: Eukaryotic RPB5 N-terminal domain
- Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
| 1dzf | [A] | [A] | [A] | 1.9 | |||
| 1i3q | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 3.1 | MG:MAGNESIUM ION ZN:ZINC ION | ||
| 1i50 | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 2.8 | MN:MANGANESE (II) ION ZN:ZINC ION | ||
| 1i6h | [ABCDEFGHIJ](A)(a) | [ABCDEFGHIJ](A)(a) | [ABCDEFGHIJ](A)(a) | 3.3 | MG:MAGNESIUM ION ZN:ZINC ION | ||
| 1k83 | [ABCDEFGHIJ][a] | [ABCDEFGHIJ][a] | [ABCDEFGHIJ][a] | 2.8 | CSX:S-OXY CYSTEINE HYP:4-HYDROXYPROLINE ILX:4,5-DIHYDROXYISOLEUCINE MN:MANGANESE (II) ION TRX:6-HYDROXYTRYPTOPHAN ZN:ZINC ION | ||
| 1twa | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 3.2 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION ZN:ZINC ION | ||
| 1twc | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 3 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION ZN:ZINC ION | ||
| 1twf | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 2.3 | MN:MANGANESE (II) ION UTP:URIDINE 5___sq___-TRIPHOSPHATE ZN:ZINC ION | ||
| 1twg | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 3.3 | CTP:CYTIDINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION ZN:ZINC ION | ||
| 1twh | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 3.4 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION ZN:ZINC ION | ||
| 2b63 | [ABCDEFGHIJKL](a) | [A2BCDEFGHIJK](a) | [A2BCDEFGHIJK](a) | 3.8 | 5BU:5-BROMO-URIDINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2b8k | [ABCDEFGHIJKL] | [ABCDEFGHIJKL] | [ABCDEFGHIJKL] | 4.15 | ZN:ZINC ION | ||
| 2e2h | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 3.95 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2e2i | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 3.41 | DGT:2___sq___-DEOXYGUANOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2e2j | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 3.5 | G2P:PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2ja5 | [ABCDEFGHIJKL](A)(a) | [ABCDEFGHIJKL](A)(a) | [ABCDEFGHIJKL](A)(a) | 3.8 | BRU:5-BROMO-2___sq___-DEOXYURIDINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2ja6 | [ABCDEFGHIJKL](AB)(a) | [ABCDEFGHIJKL](AB)(a) | [ABCDEFGHIJKL](AB)(a) | 4 | BRU:5-BROMO-2___sq___-DEOXYURIDINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION TT:[(1R,3R,4S,9R,10S,12R,15AS,15BR,18BR,18CS)-10-HYDROXY-15A,15B-DIMETHYL-13,15,16,18-TETRAOXOHEXADECAHYDRO-8H-9,12-EPOXY-1,4-METHANO-2,5,7-TRIOXA-12A,14,17,18A-TETRAAZACYCLOHEXADECA[1,2,3,4-DEF]BIPHENYLEN-3-YL]METHYL DIHYDROGEN PHOSPHATE ZN:ZINC ION | ||
| 2ja7 | [ABCDEFGHIJKL](AB)(a) | [ABCDEFGHIJKL](AB)(a) | [ABCDEFGHIJKL](AB)(a) | 3.8 | BRU:5-BROMO-2___sq___-DEOXYURIDINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION TT:[(1R,3R,4S,9R,10S,12R,15AS,15BR,18BR,18CS)-10-HYDROXY-15A,15B-DIMETHYL-13,15,16,18-TETRAOXOHEXADECAHYDRO-8H-9,12-EPOXY-1,4-METHANO-2,5,7-TRIOXA-12A,14,17,18A-TETRAAZACYCLOHEXADECA[1,2,3,4-DEF]BIPHENYLEN-3-YL]METHYL DIHYDROGEN PHOSPHATE ZN:ZINC ION | ||
| 2ja8 | [ABCDEFGHIJKL](AB)(a) | [ABCDEFGHIJKL](AB)(a) | [ABCDEFGHIJKL](AB)(a) | 3.8 | BRU:5-BROMO-2___sq___-DEOXYURIDINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION TT:[(1R,3R,4S,9R,10S,12R,15AS,15BR,18BR,18CS)-10-HYDROXY-15A,15B-DIMETHYL-13,15,16,18-TETRAOXOHEXADECAHYDRO-8H-9,12-EPOXY-1,4-METHANO-2,5,7-TRIOXA-12A,14,17,18A-TETRAAZACYCLOHEXADECA[1,2,3,4-DEF]BIPHENYLEN-3-YL]METHYL DIHYDROGEN PHOSPHATE ZN:ZINC ION | ||
| 2nvq | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 2.9 | DUT:DEOXYURIDINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2nvt | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 3.36 | G2P:PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2nvx | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 3.6 | DUT:DEOXYURIDINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION ZN:ZINC ION | ||
| 2nvy | [ABCDEFGHIJ] | [ABCDEFGHIJ] | [ABCDEFGHIJ] | 3.4 | MN:MANGANESE (II) ION ZN:ZINC ION | ||
| 2nvz | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 4.3 | MG:MAGNESIUM ION UTP:URIDINE 5___sq___-TRIPHOSPHATE ZN:ZINC ION | ||
| 2yu9 | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | [ABCDEFGHIJ](AB)(a) | 3.4 | MG:MAGNESIUM ION UTP:URIDINE 5___sq___-TRIPHOSPHATE ZN:ZINC ION | ||
| 4c2m | [A2BCDEFGHIJKLMN] | [A2B2CDEFGHIJKLM] | [A2B2CDEFGHIJKLM] | 2.8 | SO4:SULFATE ION ZN:ZINC ION | ||
| 4c3h | [ABCDEFGHIJKLMN] | [A2BCDEFGHIJKLM] | [A2BCDEFGHIJKLM] | 3.27 | ZN:ZINC ION | ||
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
