[A2B2C2]
- Classes: All alpha proteins
- Folds: Retrovirus capsid protein, N-terminal core domain
- Superfamilies: Retrovirus capsid protein, N-terminal core domain
- Families: Retrovirus capsid protein, N-terminal core domain
- Protein Domains: HIV-1 capsid protein
- Species: Human immunodeficiency virus type 1 [TaxId: 11676]
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
1afv | [A2B2C2] | [A4B2] | [A4B2] | 3.7 | PB:LEAD (II) ION | ||
1ak4 | [AB] | [AB] | [AB] | 2.36 | |||
1e6j | [ABC] | [A2B] | [A2B] | 3 | |||
1gwp | [A] | [A] | [A] | SOLUTION NMR |
|||
1l6n | [A] | [A] | [A] | SOLUTION NMR |
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1m9c | [AB] | [AB] | [AB] | 2 | |||
1m9d | [AB] | [AB] | [AB] | 1.9 | |||
1m9e | [AB] | [AB] | [AB] | 1.72 | |||
1m9f | [AB] | [AB] | [AB] | 1.73 | |||
1m9x | [AB] | [AB] | [AB] | 1.7 | |||
1m9y | [AB] | [AB] | [AB] | 1.9 | |||
2gol | [AB] | [AB] | [AB] | 2.2 | SO4:SULFATE ION | ||
2gon | [A] | [A] | [A] | 1.9 | FLC:CITRATE ANION MSE:SELENOMETHIONINE | ||
2jpr | [A] | [A] | [A] | SOLUTION NMR |
JPR:1-(3-CHLORO-4-METHYLPHENYL)-3-{2-[({5-[(DIMETHYLAMINO)METHYL]-2-FURYL}METHYL)THIO]ETHYL}UREA | ||
2m8l | [A2] | [A2] | [A2] | SOLUTION NMR; SOLUTION SCATTERING |
|||
2m8n | [A] | [A] | [A] | SOLUTION NMR; SOLUTION SCATTERING |
|||
2m8p | [A] | [A] | [A] | SOLUTION NMR; SOLUTION SCATTERING |
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2pwm | [A2] | [A2] | [A2] | 1.9 | CL:CHLORIDE ION | ||
2pwo | [A2] | [A2] | [A2] | 1.45 | CL:CHLORIDE ION | ||
3dik | [A] | [A] | [A] | ELECTRON CRYSTALLOGRAPHY 9 |
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4dga | [AB] | [AB] | [AB] | 1.9 | |||
4dge | [AB] | [AB] | [AB] | 2.2 | |||
4e91 | [A] | [A] | [A] | 1.7 | 0OE:4-{2-[5-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]-1-[3-(1H-IMIDAZOL-1-YL)PROPYL]-1H-BENZIMIDAZOL-5-YL}BENZOICACID 0OF:(3S)-1-ETHYL-3-[3-HYDROXY-5-(PYRIDIN-3-YL)PHENYL]-5-PHENYL-7-(TRIFLUOROMETHYL)-1H-1,5-BENZODIAZEPINE-2,4(3H,5H)-DIONE IOD:IODIDE ION | ||
4e92 | [A] | [A] | [A] | 1.8 | 0OE:4-{2-[5-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]-1-[3-(1H-IMIDAZOL-1-YL)PROPYL]-1H-BENZIMIDAZOL-5-YL}BENZOICACID 0OG:3-{5-[3-ETHYL-5-(5-METHYLFURAN-2-YL)-1H-PYRAZOL-1-YL]-1-[(6-OXO-1,6-DIHYDROPYRIDIN-3-YL)METHYL]-1H-BENZIMIDAZOL-2-YL}-4-HYDROXYBENZOIC ACID | ||
4inb | [A2] | [A2] | [A2] | 1.8 | 1F6:(3Z)-3-{[(2-METHOXYETHYL)AMINO]METHYLIDENE}-1-METHYL-5-PHENYL-7-(TRIFLUOROMETHYL)-1H-1,5-BENZODIAZEPINE-2,4(3H,5H)-DIONE NA:SODIUM ION | ||
4j93 | [A] | [A] | [A] | 1.74 | 0OE:4-{2-[5-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]-1-[3-(1H-IMIDAZOL-1-YL)PROPYL]-1H-BENZIMIDAZOL-5-YL}BENZOICACID 1JR:(4S)-3-PHENYL-4-(PYRIDIN-3-YL)-4,5-DIHYDROPYRROLO[3,4-C]PYRAZOL-6(2H)-ONE | ||
4lqw | [AB] | [AB] | [AB] | 1.95 | |||
4nx4 | [A] | [A] | [A] | 1.5 | CL:CHLORIDE ION JPR:1-(3-CHLORO-4-METHYLPHENYL)-3-{2-[({5-[(DIMETHYLAMINO)METHYL]-2-FURYL}METHYL)THIO]ETHYL}UREA ZN:ZINC ION | ||
4qnb | [A6] | [A6] | [A6] | 2 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE | ||
4u0e | [A6] | [A6] | [A6] | 2.04 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE CL:CHLORIDE ION | ||
4u0f | [A6] | [A6] | [A6] | 2.22 | 3A8:(4S)-4-(4-HYDROXYPHENYL)-3-PHENYL-4,5-DIHYDROPYRROLO[3,4-C]PYRAZOL-6(1H)-ONE EDO:1,2-ETHANEDIOL | ||
4wym | [A6][a6] | [A6][a6] | [A6][a6] | 2.6 | |||
4xfx | [A6] | [A6] | [A6] | 2.43 | CL:CHLORIDE ION IOD:IODIDE ION | ||
4xfy | [A6] | [A6] | [A6] | 2.8 | 1PE:PENTAETHYLENE GLYCOL CL:CHLORIDE ION | ||
4xfz | [A6] | [A6] | [A6] | 2.7 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE CL:CHLORIDE ION IOD:IODIDE ION | ||
4xro | [A6] | [A6] | [A6] | 2.01 | |||
4xrq | [A6] | [A6] | [A6] | 1.95 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE | ||
5hgk | [A] | [A] | [A] | 1.76 | CL:CHLORIDE ION | ||
5hgl | [A6] | [A6] | [A6] | 3.1 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE CL:CHLORIDE ION | ||
5hgm | [A6] | [A6] | [A6] | 2.04 | DTP:2___sq___-DEOXYADENOSINE 5___sq___-TRIPHOSPHATE | ||
5hgn | [A6] | [A6] | [A6] | 1.9 | |||
5hgo | [A6] | [A6] | [A6] | 2 | |||
5hgp | [A6] | [A6] | [A6] | 1.95 | BHC:BENZENE HEXACARBOXYLIC ACID | ||
5jpa | [A6] | [A6] | [A6] | 1.7 | |||
5w4o | [A6] | [A6] | [A6] | 2.09 | CL:CHLORIDE ION IOD:IODIDE ION | ||
5w4p | [A6] | [A6] | [A6] | 2.19 | CL:CHLORIDE ION IOD:IODIDE ION | ||
5w4q | [A6] | [A6] | [A6] | 2.29 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6axr | [A6] | [A6] | [A6] | 2.3 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6axs | [A6] | [A6] | [A6] | 2.4 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6axt | [A6] | [A6] | [A6] | 2.4 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6axv | [A6] | [A6] | [A6] | 2.77 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE CL:CHLORIDE ION IOD:IODIDE ION | ||
6axw | [A6] | [A6] | [A6] | 2.4 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6axx | [A6] | [A6] | [A6] | 2.6 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6axy | [A6] | [A6] | [A6] | 2.78 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6b2g | [A6] | [A6] | [A6] | 2.41 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6b2h | [A6] | [A6] | [A6] | 2.6 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6b2i | [A6] | [A6] | [A6] | 2.5 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6b2j | [A6] | [A6] | [A6] | 2.21 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6b2k | [A6] | [A6] | [A6] | 2 | CL:CHLORIDE ION IOD:IODIDE ION | ||
6bht | [A6] | [A6] | [A6] | 2.69 | IHP:INOSITOL HEXAKISPHOSPHATE | ||
6erm | [A6] | [A6] | [A6] | 2 | AZT:3___sq___-AZIDO-3___sq___-DEOXYTHYMIDINE-5___sq___-TRIPHOSPHATE | ||
6ern | [A6] | [A6] | [A6] | 2.36 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE | ||
6es8 | [A6] | [A6] | [A6] | 1.9 | IHP:INOSITOL HEXAKISPHOSPHATE | ||
6h09 | [A6] | [A6] | [A6] | 2 | IHP:INOSITOL HEXAKISPHOSPHATE | ||
6obh | [A2B2C2] | [A6] | [A6] | 2.96 | NA:SODIUM ION | ||
6omt | [A6] | [A6] | [A6] | 2.05 | |||
6r6q | [A6] | [A6] | [A6] | 2.73 | |||
6r8c | [A6] | [A6] | [A6] | 1.92 | 5MY:MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE | ||
6v2f | [A6] | [A6] | [A6] | 2 | QNG:N-[(1S)-1-(3-{4-CHLORO-3-[(METHYLSULFONYL)AMINO]-1-(2,2,2-TRIFLUOROETHYL)-1H-INDAZOL-7-YL}-6-[3-METHYL-3-(METHYLSULFONYL)BUT-1-YN-1-YL]PYRIDIN-2-YL)-2-(3,5-DIFLUOROPHENYL)ETHYL]-2-[(3BS,4AR)-5,5-DIFLUORO-3-(TRIFLUOROMETHYL)-3B,4,4A,5-TETRAHYDRO-1H-CYCLOPROPA[3,4]CYCLOPENTA[1,2-C]PYRAZOL-1-YL]ACETAMIDE | ||
6vkv | [A6] | [A6] | [A6] | 2.22 | CL:CHLORIDE ION IOD:IODIDE ION QNG:N-[(1S)-1-(3-{4-CHLORO-3-[(METHYLSULFONYL)AMINO]-1-(2,2,2-TRIFLUOROETHYL)-1H-INDAZOL-7-YL}-6-[3-METHYL-3-(METHYLSULFONYL)BUT-1-YN-1-YL]PYRIDIN-2-YL)-2-(3,5-DIFLUOROPHENYL)ETHYL]-2-[(3BS,4AR)-5,5-DIFLUORO-3-(TRIFLUOROMETHYL)-3B,4,4A,5-TETRAHYDRO-1H-CYCLOPROPA[3,4]CYCLOPENTA[1,2-C]PYRAZOL-1-YL]ACETAMIDE |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA