OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 1gam [A2]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

Download

Slab plane

Direction	Proportion
From front	%
From back	%
Move slab

Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B

Title

GAMMA B CRYSTALLIN TRUNCATED C-TERMINAL DOMAIN

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
1gam			8605629	X-RAY DIFFRACTION/2.6

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A2]	[A2]	[A2]

Interfaces

Interface ID	Chain	Inaterface Class	Interface Type	Contact Type
1gam_AB	A B	EN_iE EN_iE	i1_CR(E10,N10)_CE(E3,N4)_EE(Ah1,iE1,S1)_EN(L1,S5) i1_CR(E10,N10)_CE(E3,N4)_EE(Ah1,iE1,S1)_EN(L1,S5)	c2_RP(EE10,NN14,NE8,EN8)_EE(S1)_EN(L1,S6) c2_RP(EE10,NN14,NE8,EN8)_EE(S1)_EN(L1,S6)

Interface Class

Interface ID	Interface 1						Interface 2
	Domain	Number of contact residues	Binding site Class	Percentages of Secondary structures(%)			Domain	Number of contact residues	Binding site Class	Percentages of Secondary structures(%)
	Domain	Number of contact residues	Binding site Class	H	E	N	Domain	Number of contact residues	Binding site Class	H	E	N
1gam_AB	A	13	EN_iE	0	100	46.2	B	14	EN_iE	0	57.1	42.9

Interface Type: Information for each interface

Interface ID	chain	Number of contact residues			Number of elements					Number of contacts between Secondary structure elements
		Number of contact residues			Number of elements					HH			EE						HE			HN		EN
		Hn	En	Nn	H	E	N	R	L	P	A	S	P	A	S	Ph	Ah	Ih	P	A	S	L	S	L	S
1gam_AB	A	0	13	6	0	3	3	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	4
1gam_AB	B	0	8	6	0	3	3	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	5

Contact Type: Information of contacts between interfaces

Interface ID	Number of residue pairs between SS elements									Number of contacts between Secondary structure elements
	H-H	E-E	N-N	H-E	H-N	N-E	E-H	N-H	E-N	H-H				E-E					H-E				H-N			E-N
	H-H	E-E	N-N	H-E	H-N	N-E	E-H	N-H	E-N	P	A	S	Ih	P	A	S	IPh	IAh	P	A	S	Ih	L	S	Ih	L	S	Ih
1gam_AB	0	12	11	0	0	2	0	0	2	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	4	0

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
23594	A:	All beta proteins	gamma-Crystallin-like	gamma-Crystallin-like	Crystallins/Ca-binding development proteins	gamma-Crystallin	Cow (Bos taurus), isoform II (B) [TaxId: 9913]
23595	B:	All beta proteins	gamma-Crystallin-like	gamma-Crystallin-like	Crystallins/Ca-binding development proteins	gamma-Crystallin	Cow (Bos taurus), isoform II (B) [TaxId: 9913]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
1gamA00	2.60.20.10		:Sandwich	:Gamma-B Crystallin; domain 1	:Crystallins
1gamB00	2.60.20.10		:Sandwich	:Gamma-B Crystallin; domain 1	:Crystallins