OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 1jkj [A2B2]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Slab plane

Direction	Proportion
From front	%
From back	%
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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	A
D	B

Title

E. COLI SCS

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
1jkj			11781092	X-RAY DIFFRACTION/2.35	COA:COENZYME A GOL:GLYCEROL PO4:PHOSPHATE ION SO4:SULFATE ION

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A2B2]	[A2B2]	[A2B2]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
66800	A:1-121	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	CoA-binding domain	Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain	Escherichia coli [TaxId: 562]
66801	A:122-287	Alpha and beta proteins (a/b)	Flavodoxin-like	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase, alpha-chain, C-terminal domain	Escherichia coli [TaxId: 562]
66803	B:1-238	Alpha and beta proteins (a+b)	ATP-grasp	Glutathione synthetase ATP-binding domain-like	Succinyl-CoA synthetase, beta-chain, N-terminal domain	Succinyl-CoA synthetase, beta-chain, N-terminal domain	Escherichia coli [TaxId: 562]
66802	B:239-388	Alpha and beta proteins (a/b)	Flavodoxin-like	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase, beta-chain, C-terminal domain	Escherichia coli [TaxId: 562]
66804	D:1-121	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	CoA-binding domain	Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain	Escherichia coli [TaxId: 562]
66805	D:122-287	Alpha and beta proteins (a/b)	Flavodoxin-like	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase, alpha-chain, C-terminal domain	Escherichia coli [TaxId: 562]
66807	E:1-238	Alpha and beta proteins (a+b)	ATP-grasp	Glutathione synthetase ATP-binding domain-like	Succinyl-CoA synthetase, beta-chain, N-terminal domain	Succinyl-CoA synthetase, beta-chain, N-terminal domain	Escherichia coli [TaxId: 562]
66806	E:239-385	Alpha and beta proteins (a/b)	Flavodoxin-like	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase domains	Succinyl-CoA synthetase, beta-chain, C-terminal domain	Escherichia coli [TaxId: 562]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
1jkjA01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1jkjA02	3.40.50.261		:3-Layer(aba) Sandwich	:Rossmann fold	:Succinyl-CoA synthetase domains
1jkjB01	3.30.470.20		:2-Layer Sandwich	:D-amino Acid Aminotransferase; Chain A, domain 1	:ATP-grasp fold, B domain
1jkjB02	3.30.1490.20		:2-Layer Sandwich	:Dna Ligase; domain 1	:ATP-grasp fold, A domain
1jkjB03	3.40.50.261		:3-Layer(aba) Sandwich	:Rossmann fold	:Succinyl-CoA synthetase domains
1jkjD01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1jkjD02	3.40.50.261		:3-Layer(aba) Sandwich	:Rossmann fold	:Succinyl-CoA synthetase domains
1jkjE01	3.30.470.20		:2-Layer Sandwich	:D-amino Acid Aminotransferase; Chain A, domain 1	:ATP-grasp fold, B domain
1jkjE02	3.30.1490.20		:2-Layer Sandwich	:Dna Ligase; domain 1	:ATP-grasp fold, A domain
1jkjE03	3.40.50.261		:3-Layer(aba) Sandwich	:Rossmann fold	:Succinyl-CoA synthetase domains