OLIGAMI : Oligomer Architecture and Molecular Interface

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Title

CRYSTAL STRUCTURE OF BOVINE GLUTAMATE DEHYDROGENASE-ADP COMPLEX

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
1nqt			12653548	X-RAY DIFFRACTION/3.5	ADP:ADENOSINE-5___sq___-DIPHOSPHATE

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A6]	[A6]	[A6]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
86052	A:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86053	A:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86054	B:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86055	B:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86056	C:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86057	C:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86058	D:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86059	D:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86060	E:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86061	E:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86062	F:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86063	F:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86064	G:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86065	G:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86066	H:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86067	H:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86068	I:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86069	I:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86070	J:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86071	J:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86072	K:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86073	K:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86074	L:209-501	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Aminoacid dehydrogenase-like, C-terminal domain	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]
86075	L:6-208	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	Glutamate dehydrogenase	Cow (Bos taurus) [TaxId: 9913]

CATH

CATH ID	Node	Architecture	Topology	Homology
1nqtA01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtA02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtA03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtB01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtB02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtB03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtC01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtC02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtC03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtD01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtD02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtD03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtE01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtE02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtE03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtF01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtF02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtF03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtG01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtG02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtG03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtH01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtH02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtH03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtI01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtI02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtI03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtJ01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtJ02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtJ03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtK01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtK02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtK03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:
1nqtL01	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
1nqtL02	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1nqtL03	1.10.287.140	:Orthogonal Bundle	:Helix Hairpins	:

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D
E	E
F	F

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