PDB ID : 1nyt [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
Title
SHIKIMATE DEHYDROGENASE AROE COMPLEXED WITH NADP+

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
1nyt
12637497 X-RAY DIFFRACTION/1.5 DTV:(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
SO4:SULFATE ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
86418 A:1-101Alpha and beta proteins (a/b)Aminoacid dehydrogenase-like, N-terminal domainAminoacid dehydrogenase-like, N-terminal domainShikimate dehydrogenase-likeShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]
86417 A:102-271Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsAminoacid dehydrogenase-like, C-terminal domainShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]
86420 B:1-101Alpha and beta proteins (a/b)Aminoacid dehydrogenase-like, N-terminal domainAminoacid dehydrogenase-like, N-terminal domainShikimate dehydrogenase-likeShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]
86419 B:102-271Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsAminoacid dehydrogenase-like, C-terminal domainShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]
86422 C:1-101Alpha and beta proteins (a/b)Aminoacid dehydrogenase-like, N-terminal domainAminoacid dehydrogenase-like, N-terminal domainShikimate dehydrogenase-likeShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]
86421 C:102-269Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsAminoacid dehydrogenase-like, C-terminal domainShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]
86424 D:1-101Alpha and beta proteins (a/b)Aminoacid dehydrogenase-like, N-terminal domainAminoacid dehydrogenase-like, N-terminal domainShikimate dehydrogenase-likeShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]
86423 D:102-270Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsAminoacid dehydrogenase-like, C-terminal domainShikimate 5-dehydrogenase AroEEscherichia coli [TaxId: 562]

CATH
CATH ID Node Class Architecture Topology Homology
1nytA013.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
1nytA023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1nytB013.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
1nytB023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1nytC013.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
1nytC023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1nytD013.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
1nytD023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain