OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 1o94 [A2B2C2]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D
E	E
F	F

Title

TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND ELECTRON TRANSFERRING FLAVOPROTEIN

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
1o94			12567183	X-RAY DIFFRACTION/2	ADP:ADENOSINE-5___sq___-DIPHOSPHATE AMP:ADENOSINE MONOPHOSPHATE FMN:FLAVIN MONONUCLEOTIDE SF4:IRON/SULFUR CLUSTER

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A2B2C2]	[A4B2]	[A4B2]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
81200	A:1-340	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	FMN-linked oxidoreductases	FMN-linked oxidoreductases	Trimethylamine dehydrogenase, N-terminal domain	Methylophilus methylotrophus, w3a1 [TaxId: 17]
81202	A:341-489 A:646-729	Alpha and beta proteins (a/b)	Nucleotide-binding domain	Nucleotide-binding domain	N-terminal domain of adrenodoxin reductase-like	Trimethylamine dehydrogenase, middle domain	Methylophilus methylotrophus, w3a1 [TaxId: 17]
81201	A:490-645	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	C-terminal domain of adrenodoxin reductase-like	Trimethylamine dehydrogenase, C-terminal domain	Methylophilus methylotrophus, w3a1 [TaxId: 17]
81203	B:1-340	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	FMN-linked oxidoreductases	FMN-linked oxidoreductases	Trimethylamine dehydrogenase, N-terminal domain	Methylophilus methylotrophus, w3a1 [TaxId: 17]
81205	B:341-489 B:646-729	Alpha and beta proteins (a/b)	Nucleotide-binding domain	Nucleotide-binding domain	N-terminal domain of adrenodoxin reductase-like	Trimethylamine dehydrogenase, middle domain	Methylophilus methylotrophus, w3a1 [TaxId: 17]
81204	B:490-645	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	C-terminal domain of adrenodoxin reductase-like	Trimethylamine dehydrogenase, C-terminal domain	Methylophilus methylotrophus, w3a1 [TaxId: 17]
81206	C:	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Adenine nucleotide alpha hydrolases-like	ETFP subunits	Small, beta subunit of electron transfer flavoprotein ETFP	Methylophilus methylotrophus [TaxId: 17]
81207	D:	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Adenine nucleotide alpha hydrolases-like	ETFP subunits	Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain	Methylophilus methylotrophus [TaxId: 17]
81208	E:	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Adenine nucleotide alpha hydrolases-like	ETFP subunits	Small, beta subunit of electron transfer flavoprotein ETFP	Methylophilus methylotrophus [TaxId: 17]
81209	F:	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Adenine nucleotide alpha hydrolases-like	ETFP subunits	Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain	Methylophilus methylotrophus [TaxId: 17]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
1o94A01	3.20.20.70		:Alpha-Beta Barrel	:TIM Barrel	:Aldolase class I
1o94A02	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1o94A03	3.50.50.60		:3-Layer(bba) Sandwich	:FAD/NAD(P)-binding domain	:FAD/NAD(P)-binding domain
1o94B01	3.20.20.70		:Alpha-Beta Barrel	:TIM Barrel	:Aldolase class I
1o94B02	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1o94B03	3.50.50.60		:3-Layer(bba) Sandwich	:FAD/NAD(P)-binding domain	:FAD/NAD(P)-binding domain
1o94C00	3.40.50.620		:3-Layer(aba) Sandwich	:Rossmann fold	:HUPs
1o94D00	3.40.50.620		:3-Layer(aba) Sandwich	:Rossmann fold	:HUPs
1o94E00	3.40.50.620		:3-Layer(aba) Sandwich	:Rossmann fold	:HUPs
1o94F00	3.40.50.620		:3-Layer(aba) Sandwich	:Rossmann fold	:HUPs