PDB ID : 1p3d [A]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


Download

Slab plane

Direction Proportion
From front %
From back %
Move slab

Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
Title
CRYSTAL STRUCTURE OF UDP-N-ACETYLMURAMIC ACID:L-ALANINE LIGASE (MURC) IN COMPLEX WITH UMA AND ANP.

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
1p3d
12837790 X-RAY DIFFRACTION/1.7 ANP:PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
MN:MANGANESE (II) ION
MSE:SELENOMETHIONINE
UMA:URIDINE-5___sq___-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A] [A] [A]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
87730 A:107-321Alpha and beta proteins (a/b)Ribokinase-likeMurD-like peptide ligases, catalytic domainMurCDEFUDP-N-acetylmuramate-alanine ligase MurCHaemophilus influenzae [TaxId: 727]
87728 A:11-106Alpha and beta proteins (a/b)MurCD N-terminal domainMurCD N-terminal domainMurCD N-terminal domainUDP-N-acetylmuramate-alanine ligase MurCHaemophilus influenzae [TaxId: 727]
87729 A:322-473Alpha and beta proteins (a/b)MurD-like peptide ligases, peptide-binding domainMurD-like peptide ligases, peptide-binding domainMurCDEF C-terminal domainUDP-N-acetylmuramate-alanine ligase MurCHaemophilus influenzae [TaxId: 727]
87733 B:107-321Alpha and beta proteins (a/b)Ribokinase-likeMurD-like peptide ligases, catalytic domainMurCDEFUDP-N-acetylmuramate-alanine ligase MurCHaemophilus influenzae [TaxId: 727]
87731 B:14-106Alpha and beta proteins (a/b)MurCD N-terminal domainMurCD N-terminal domainMurCD N-terminal domainUDP-N-acetylmuramate-alanine ligase MurCHaemophilus influenzae [TaxId: 727]
87732 B:322-473Alpha and beta proteins (a/b)MurD-like peptide ligases, peptide-binding domainMurD-like peptide ligases, peptide-binding domainMurCDEF C-terminal domainUDP-N-acetylmuramate-alanine ligase MurCHaemophilus influenzae [TaxId: 727]

CATH
CATH ID Node Class Architecture Topology Homology
1p3dA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1p3dA023.40.1190.10:3-Layer(aba) Sandwich:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase:Mur-like, catalytic domain
1p3dA033.90.190.20:Alpha-Beta Complex:Protein-Tyrosine Phosphatase; Chain A:Mur ligase, C-terminal domain
1p3dB013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1p3dB023.40.1190.10:3-Layer(aba) Sandwich:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase:Mur-like, catalytic domain
1p3dB033.90.190.20:Alpha-Beta Complex:Protein-Tyrosine Phosphatase; Chain A:Mur ligase, C-terminal domain