PDB ID : 1psd [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CA
DB
Title
THE ALLOSTERIC LIGAND SITE IN THE VMAX-TYPE COOPERATIVE ENZYME PHOSPHOGLYCERATE DEHYDROGENASE

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
1psd
7719856 X-RAY DIFFRACTION/2.75 NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE
SER:SERINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
30097 A:108-295Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsFormate/glycerate dehydrogenases, NAD-domainPhosphoglycerate dehydrogenaseEscherichia coli [TaxId: 562]
39354 A:327-410Alpha and beta proteins (a+b)Ferredoxin-likeACT-likePhosphoglycerate dehydrogenase, regulatory (C-terminal) domainPhosphoglycerate dehydrogenase, regulatory (C-terminal) domainEscherichia coli [TaxId: 562]
31357 A:7-107
A:296-326		Alpha and beta proteins (a/b)Flavodoxin-likeFormate/glycerate dehydrogenase catalytic domain-likeFormate/glycerate dehydrogenases, substrate-binding domainPhosphoglycerate dehydrogenaseEscherichia coli [TaxId: 562]
30098 B:108-295Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsFormate/glycerate dehydrogenases, NAD-domainPhosphoglycerate dehydrogenaseEscherichia coli [TaxId: 562]
39355 B:327-410Alpha and beta proteins (a+b)Ferredoxin-likeACT-likePhosphoglycerate dehydrogenase, regulatory (C-terminal) domainPhosphoglycerate dehydrogenase, regulatory (C-terminal) domainEscherichia coli [TaxId: 562]
31358 B:7-107
B:296-326		Alpha and beta proteins (a/b)Flavodoxin-likeFormate/glycerate dehydrogenase catalytic domain-likeFormate/glycerate dehydrogenases, substrate-binding domainPhosphoglycerate dehydrogenaseEscherichia coli [TaxId: 562]

CATH
CATH ID Node Class Architecture Topology Homology
1psdA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1psdA023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1psdA033.30.70.260:2-Layer Sandwich:Alpha-Beta Plaits:
1psdB013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1psdB023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1psdB033.30.70.260:2-Layer Sandwich:Alpha-Beta Plaits: