PDB ID : 1up4 [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
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From back %
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CD
DC
Title
STRUCTURE OF THE 6-PHOSPHO-BETA GLUCOSIDASE FROM THERMOTOGA MARITIMA AT 2.85 ANGSTROM RESOLUTION IN THE MONOCLINIC FORM

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
1up4
15670594 X-RAY DIFFRACTION/2.85 MSE:SELENOMETHIONINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
113358 A:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113359 A:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113360 B:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113361 B:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113362 C:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113363 C:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113364 D:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113365 D:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113366 E:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113367 E:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113368 F:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113369 F:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113370 G:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113371 G:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113372 H:1-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
113373 H:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]

CATH
CATH ID Node Class Architecture Topology Homology
1up4A013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4A023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up4B013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4B023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up4C013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4C023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up4D013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4D023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up4E013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4E023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up4F013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4F023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up4G013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4G023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up4H013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up4H023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal