PDB ID : 1up6 [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
From front %
From back %
Move slab

Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
Title
STRUCTURE OF THE 6-PHOSPHO-BETA GLUCOSIDASE FROM THERMOTOGA MARITIMA AT 2.55 ANGSTROM RESOLUTION IN THE TETRAGONAL FORM WITH MANGANESE, NAD+ AND GLUCOSE-6-PHOSPHATE

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
1up6
15237973 X-RAY DIFFRACTION/2.55 G6P:6-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
MN:MANGANESE (II) ION
MSE:SELENOMETHIONINE
NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE
SO4:SULFATE ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
107977 A:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107976 A:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107979 B:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107978 B:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107981 C:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107980 C:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107983 D:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107982 D:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107985 E:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107984 E:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107987 F:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107986 F:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107989 G:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107988 G:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107991 H:163-415Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeAglA-like glucosidase6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]
107990 H:2-162Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsLDH N-terminal domain-like6-phospho-beta-glucosidaseThermotoga maritima [TaxId: 2336]

CATH
CATH ID Node Class Architecture Topology Homology
1up6A013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6A023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up6B013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6B023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up6C013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6C023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up6D013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6D023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up6E013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6E023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up6F013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6F023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up6G013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6G023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
1up6H013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1up6H023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal