OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 1wdk [A2B2]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D

Title

FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM I (NATIVE2)

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
1wdk			15229654	X-RAY DIFFRACTION/2.5	ACO:ACETYL COENZYME A HG:MERCURY (II) ION N8E:3,6,9,12,15-PENTAOXATRICOSAN-1-OL NAD*:NICOTINAMIDE-ADENINE-DINUCLEOTIDE ZN:ZINC ION

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A2B2]	[A2B2]	[A2B2]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
109253	A:1-310	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	Crotonase-like	Fatty oxidation complex alpha subunit, N-terminal domain	Pseudomonas fragi [TaxId: 296]
109252	A:311-496	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	6-phosphogluconate dehydrogenase-like, N-terminal domain	Fatty oxidation complex alpha subunit, middle domain	Pseudomonas fragi [TaxId: 296]
109250	A:497-620	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	HCDH C-domain-like	Fatty oxidation complex alpha subunit, C-terminal domain	Pseudomonas fragi [TaxId: 296]
109251	A:621-715	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	HCDH C-domain-like	Fatty oxidation complex alpha subunit, C-terminal domain	Pseudomonas fragi [TaxId: 296]
109257	B:1-310	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	Crotonase-like	Fatty oxidation complex alpha subunit, N-terminal domain	Pseudomonas fragi [TaxId: 296]
109256	B:311-496	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	6-phosphogluconate dehydrogenase-like, N-terminal domain	Fatty oxidation complex alpha subunit, middle domain	Pseudomonas fragi [TaxId: 296]
109254	B:497-620	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	HCDH C-domain-like	Fatty oxidation complex alpha subunit, C-terminal domain	Pseudomonas fragi [TaxId: 296]
109255	B:621-715	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	HCDH C-domain-like	Fatty oxidation complex alpha subunit, C-terminal domain	Pseudomonas fragi [TaxId: 296]
109258	C:2-263	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase), N-terminal domain	Pseudomonas fragi [TaxId: 296]
109259	C:264-391	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase), C-terminal domain	Pseudomonas fragi [TaxId: 296]
109260	D:2-263	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase), N-terminal domain	Pseudomonas fragi [TaxId: 296]
109261	D:264-391	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase), C-terminal domain	Pseudomonas fragi [TaxId: 296]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
1wdkA01	3.90.226.10		:Alpha-Beta Complex	:2-enoyl-CoA Hydratase; Chain A, domain 1	:2-enoyl-CoA Hydratase; Chain A, domain 1
1wdkA02	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1wdkA03	1.10.1040.50		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:
1wdkB01	3.90.226.10		:Alpha-Beta Complex	:2-enoyl-CoA Hydratase; Chain A, domain 1	:2-enoyl-CoA Hydratase; Chain A, domain 1
1wdkB02	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
1wdkB03	1.10.1040.50		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:
1wdkC01	3.40.47.10		:3-Layer(aba) Sandwich	:Peroxisomal Thiolase; Chain A, domain 1	:
1wdkC02	3.40.47.10		:3-Layer(aba) Sandwich	:Peroxisomal Thiolase; Chain A, domain 1	:
1wdkD01	3.40.47.10		:3-Layer(aba) Sandwich	:Peroxisomal Thiolase; Chain A, domain 1	:
1wdkD02	3.40.47.10		:3-Layer(aba) Sandwich	:Peroxisomal Thiolase; Chain A, domain 1	: