PDB ID : 1yb4 [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
From front %
From back %
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CA
DB
Title
CRYSTAL STRUCTURE OF THE TARTRONIC SEMIALDEHYDE REDUCTASE FROM SALMONELLA TYPHIMURIUM LT2

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
1yb4
19184529 X-RAY DIFFRACTION/2.4 MSE:SELENOMETHIONINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
230410 A:1-160Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesSalmonella typhimurium [TaxId: 99287]
230412 A:161-291All alpha proteins6-phosphogluconate dehydrogenase C-terminal domain-like6-phosphogluconate dehydrogenase C-terminal domain-likeautomated matchesautomated matchesSalmonella typhimurium [TaxId: 99287]
230413 B:1-160Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesSalmonella typhimurium [TaxId: 99287]
230414 B:161-291All alpha proteins6-phosphogluconate dehydrogenase C-terminal domain-like6-phosphogluconate dehydrogenase C-terminal domain-likeautomated matchesautomated matchesSalmonella typhimurium [TaxId: 99287]

CATH
CATH ID Node Class Architecture Topology Homology
1yb4A013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1yb4A021.10.1040.10:Orthogonal Bundle:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
1yb4B013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1yb4B021.10.1040.10:Orthogonal Bundle:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2