PDB ID : 1ygy [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CA
DB
Title
CRYSTAL STRUCTURE OF D-3-PHOSPHOGLYCERATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
1ygy
15668249 X-RAY DIFFRACTION/2.3 TLA:L(+)-TARTARIC ACID
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
123151 A:3-98
A:283-316		Alpha and beta proteins (a/b)Flavodoxin-likeFormate/glycerate dehydrogenase catalytic domain-likeFormate/glycerate dehydrogenases, substrate-binding domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]
123153 A:317-451Alpha and beta proteins (a+b)FwdE/GAPDH domain-likeSerine metabolism enzymes domainSerA intervening domain-likeD-3-phosphoglycerate dehydrogenase SerAMycobacterium tuberculosis [TaxId: 1773]
123152 A:452-529Alpha and beta proteins (a+b)Ferredoxin-likeACT-likePhosphoglycerate dehydrogenase, regulatory (C-terminal) domainPhosphoglycerate dehydrogenase, regulatory (C-terminal) domainMycobacterium tuberculosis [TaxId: 1773]
123150 A:99-282Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsFormate/glycerate dehydrogenases, NAD-domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]
123155 B:3-98
B:283-316		Alpha and beta proteins (a/b)Flavodoxin-likeFormate/glycerate dehydrogenase catalytic domain-likeFormate/glycerate dehydrogenases, substrate-binding domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]
123157 B:317-451Alpha and beta proteins (a+b)FwdE/GAPDH domain-likeSerine metabolism enzymes domainSerA intervening domain-likeD-3-phosphoglycerate dehydrogenase SerAMycobacterium tuberculosis [TaxId: 1773]
123156 B:452-529Alpha and beta proteins (a+b)Ferredoxin-likeACT-likePhosphoglycerate dehydrogenase, regulatory (C-terminal) domainPhosphoglycerate dehydrogenase, regulatory (C-terminal) domainMycobacterium tuberculosis [TaxId: 1773]
123154 B:99-282Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsFormate/glycerate dehydrogenases, NAD-domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]

CATH
CATH ID Node Class Architecture Topology Homology
1ygyA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1ygyA023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1ygyA033.30.1330.90:2-Layer Sandwich:60s Ribosomal Protein L30; Chain: A; :D-3-phosphoglycerate dehydrogenase; domain 3
1ygyA043.30.70.260:2-Layer Sandwich:Alpha-Beta Plaits:
1ygyB013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1ygyB023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
1ygyB033.30.1330.90:2-Layer Sandwich:60s Ribosomal Protein L30; Chain: A; :D-3-phosphoglycerate dehydrogenase; domain 3
1ygyB043.30.70.260:2-Layer Sandwich:Alpha-Beta Plaits: