PDB ID : 2nu9 [A2B2]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CF
DG
Title
C123AT MUTANT OF E. COLI SUCCINYL-COA SYNTHETASE ORTHORHOMBIC CRYSTAL FORM

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
2nu9
17642514 X-RAY DIFFRACTION/2.9 COA:COENZYME A
NEP:N1-PHOSPHONOHISTIDINE
SO4:SULFATE ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2B2] [A2B2] [A2B2]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
148420 A:1-121Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsCoA-binding domainSuccinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domainEscherichia coli [TaxId: 562]
148421 A:122-286Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, alpha-chain, C-terminal domainEscherichia coli [TaxId: 562]
148423 B:1-238Alpha and beta proteins (a+b)ATP-graspGlutathione synthetase ATP-binding domain-likeSuccinyl-CoA synthetase, beta-chain, N-terminal domainSuccinyl-CoA synthetase, beta-chain, N-terminal domainEscherichia coli [TaxId: 562]
148422 B:239-385Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, beta-chain, C-terminal domainEscherichia coli [TaxId: 562]
148424 D:1-121Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsCoA-binding domainSuccinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domainEscherichia coli [TaxId: 562]
148425 D:122-286Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, alpha-chain, C-terminal domainEscherichia coli [TaxId: 562]
148427 E:1-238Alpha and beta proteins (a+b)ATP-graspGlutathione synthetase ATP-binding domain-likeSuccinyl-CoA synthetase, beta-chain, N-terminal domainSuccinyl-CoA synthetase, beta-chain, N-terminal domainEscherichia coli [TaxId: 562]
148426 E:239-385Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, beta-chain, C-terminal domainEscherichia coli [TaxId: 562]
148428 F:1-121Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsCoA-binding domainSuccinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domainEscherichia coli [TaxId: 562]
148429 F:122-286Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, alpha-chain, C-terminal domainEscherichia coli [TaxId: 562]
148431 G:1-238Alpha and beta proteins (a+b)ATP-graspGlutathione synthetase ATP-binding domain-likeSuccinyl-CoA synthetase, beta-chain, N-terminal domainSuccinyl-CoA synthetase, beta-chain, N-terminal domainEscherichia coli [TaxId: 562]
148430 G:239-385Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, beta-chain, C-terminal domainEscherichia coli [TaxId: 562]
148432 H:1-121Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsCoA-binding domainSuccinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domainEscherichia coli [TaxId: 562]
148433 H:122-286Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, alpha-chain, C-terminal domainEscherichia coli [TaxId: 562]
148435 I:1-238Alpha and beta proteins (a+b)ATP-graspGlutathione synthetase ATP-binding domain-likeSuccinyl-CoA synthetase, beta-chain, N-terminal domainSuccinyl-CoA synthetase, beta-chain, N-terminal domainEscherichia coli [TaxId: 562]
148434 I:239-385Alpha and beta proteins (a/b)Flavodoxin-likeSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase domainsSuccinyl-CoA synthetase, beta-chain, C-terminal domainEscherichia coli [TaxId: 562]

CATH
CATH ID Node Class Architecture Topology Homology
2nu9A013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
2nu9A023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
2nu9B013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
2nu9B023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain
2nu9B033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
2nu9D013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
2nu9D023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
2nu9E013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
2nu9E023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain
2nu9E033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
2nu9F013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
2nu9F023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
2nu9G013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
2nu9G023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain
2nu9G033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
2nu9H013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
2nu9H023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
2nu9I013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
2nu9I023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain
2nu9I033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains