PDB ID : 2nvu [A2BCD]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
From front %
From back %
Move slab

Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DI
EJ
Title
STRUCTURE OF APPBP1-UBA3~NEDD8-NEDD8-MGATP-UBC12(C111A), A TRAPPED UBIQUITIN-LIKE PROTEIN ACTIVATION COMPLEX

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
2nvu
17220875 X-RAY DIFFRACTION/2.8 ATP:ADENOSINE-5___sq___-TRIPHOSPHATE
MG:MAGNESIUM ION
ZN:ZINC ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2BCD] [A2BCD] [A2BCD]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
138660 A:Alpha and beta proteins (a/b)Activating enzymes of the ubiquitin-like proteinsActivating enzymes of the ubiquitin-like proteinsUbiquitin activating enzymes (UBA)Amyloid beta precursor protein-binding protein 1, APPBP1Human (Homo sapiens) [TaxId: 9606]
138662 B:1002-1367Alpha and beta proteins (a/b)Periplasmic binding protein-like IIPeriplasmic binding protein-like IIPhosphate binding protein-likeD-maltodextrin-binding protein, MBPEscherichia coli [TaxId: 562]
138661 B:2012-2441Alpha and beta proteins (a/b)Activating enzymes of the ubiquitin-like proteinsActivating enzymes of the ubiquitin-like proteinsUbiquitin activating enzymes (UBA)UBA3Human (Homo sapiens) [TaxId: 9606]
145698 C:3-183Alpha and beta proteins (a+b)UBC-likeUBC-likeUBC-relatedUbiquitin conjugating enzyme, UBCHuman (Homo sapiens), E2 M [TaxId: 9606]
138663 I:Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeUbiquitin-relatedNedd8Human (Homo sapiens) [TaxId: 9606]
138664 J:Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeUbiquitin-relatedNedd8Human (Homo sapiens) [TaxId: 9606]

CATH
CATH ID Node Class Architecture Topology Homology
2nvuA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
2nvuB013.40.190.10:3-Layer(aba) Sandwich:D-Maltodextrin-Binding Protein; domain 2:Periplasmic binding protein-like II
2nvuB023.40.190.10:3-Layer(aba) Sandwich:D-Maltodextrin-Binding Protein; domain 2:Periplasmic binding protein-like II
2nvuB033.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
2nvuB041.10.10.520:Orthogonal Bundle:Arc Repressor Mutant, subunit A:Ubiquitin activating enzymes (Uba3). Chain: B, domain 2
2nvuB053.10.290.20:Roll:Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A:Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3
2nvuC013.10.110.10:Roll:Ubiquitin Conjugating Enzyme:Ubiquitin Conjugating Enzyme
2nvuI003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
2nvuJ003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1