OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 2yfh [A6]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Slab plane

Direction	Proportion
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From back	%
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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D
E	E
F	F

Title

STRUCTURE OF A CHIMERIC GLUTAMATE DEHYDROGENASE

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
2yfh			27303899	X-RAY DIFFRACTION/2.7

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A6]	[A6]	[A6]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
231614	A:1-195	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	automated matches	Clostridium symbiosum [TaxId: 1512]
231652	A:196-448	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium symbiosum [TaxId: 1512]
231651	B:196-448	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium symbiosum [TaxId: 1512]
231617	B:2-195	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	automated matches	Clostridium symbiosum [TaxId: 1512]
231653	C:196-448	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium symbiosum [TaxId: 1512]
231615	C:2-195	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	automated matches	Clostridium symbiosum [TaxId: 1512]
231646	D:196-448	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium symbiosum [TaxId: 1512]
231616	D:2-195	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	automated matches	Clostridium symbiosum [TaxId: 1512]
231618	E:1-195	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	automated matches	Clostridium symbiosum [TaxId: 1512]
231644	E:196-448	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium symbiosum [TaxId: 1512]
231642	F:196-448	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium symbiosum [TaxId: 1512]
231619	F:2-195	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenases	automated matches	Clostridium symbiosum [TaxId: 1512]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
2yfhA01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
2yfhA02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
2yfhA03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
2yfhB01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
2yfhB02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
2yfhB03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
2yfhC01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
2yfhC02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
2yfhC03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
2yfhD01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
2yfhD02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
2yfhD03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
2yfhE01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
2yfhE02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
2yfhE03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
2yfhF01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
2yfhF02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
2yfhF03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain