OLIGAMI : Oligomer Architecture and Molecular Interface

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Title

CRYSTAL STRUCTURE OF GLUTAMATE DEHYDROGENASE (GDHB) FROM THERMUS THERMOPHILUS (GLU BOUND FORM)

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
3aog			Not in PubMed	X-RAY DIFFRACTION/2.1	GLU:GLUTAMIC ACID NH4:AMMONIUM ION PO4:PHOSPHATE ION

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A6]	[A6]	[A6]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
304977	A:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304976	A:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304979	B:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304978	B:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304981	C:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304980	C:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304983	D:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304982	D:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304985	E:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304984	E:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304987	F:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304986	F:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304989	G:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304988	G:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304991	H:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304990	H:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304993	I:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304992	I:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304995	J:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304994	J:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304997	K:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304996	K:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304999	L:188-424	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]
304998	L:4-187	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Thermus thermophilus [TaxId: 262724]

CATH

CATH ID	Node	Architecture	Topology	Homology
3aogA01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogA02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogA03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogB01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogB02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogB03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogC01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogC02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogC03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogD01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogD02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogD03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogE01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogE02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogE03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogF01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogF02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogF03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogG01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogG02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogG03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogH01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogH02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogH03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogI01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogI02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogI03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogJ01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogJ02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogJ03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogK01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogK02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogK03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3aogL01	1.10.8.1210	:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3aogL02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3aogL03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D
E	E
F	F

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