OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 3cfi [ABC]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Slab plane

Direction	Proportion
From front	%
From back	%
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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C

Title

NANOBODY-AIDED STRUCTURE DETERMINATION OF THE EPSI:EPSJ PSEUDOPILIN HETERDIMER FROM VIBRIO VULNIFICUS

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
3cfi			19118632	X-RAY DIFFRACTION/2.58	CL:CHLORIDE ION

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[ABC]	[ABC]	[ABC]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
173201	A:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	GSPII I/J protein-like	Pseudopilin EpsI	Vibrio vulnificus [TaxId: 672]
173202	B:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	EpsJ-like	Type II secretory pathway component EpsJ	Vibrio vulnificus [TaxId: 672]
343774	C:2-5	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
199176	C:6-116	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama) [TaxId: 9844]
173203	D:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	GSPII I/J protein-like	Pseudopilin EpsI	Vibrio vulnificus [TaxId: 672]
173204	E:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	EpsJ-like	Type II secretory pathway component EpsJ	Vibrio vulnificus [TaxId: 672]
343775	F:2-5	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
199177	F:6-115	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama) [TaxId: 9844]
173205	G:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	GSPII I/J protein-like	Pseudopilin EpsI	Vibrio vulnificus [TaxId: 672]
173206	H:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	EpsJ-like	Type II secretory pathway component EpsJ	Vibrio vulnificus [TaxId: 672]
343776	I:1-5	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
199178	I:6-116	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama) [TaxId: 9844]
173207	J:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	GSPII I/J protein-like	Pseudopilin EpsI	Vibrio vulnificus [TaxId: 672]
173208	K:	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	EpsJ-like	Type II secretory pathway component EpsJ	Vibrio vulnificus [TaxId: 672]
343777	L:3-5	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
199179	L:6-113	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama) [TaxId: 9844]

CATH

CATH ID	Node	Architecture	Topology	Homology
3cfiA00	3.30.1300.30	:2-Layer Sandwich	:Pantoate--beta-alanine Ligase; Chain: A,domain 2	:GSPII I/J protein-like
3cfiC00	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
3cfiD00	3.30.1300.30	:2-Layer Sandwich	:Pantoate--beta-alanine Ligase; Chain: A,domain 2	:GSPII I/J protein-like
3cfiF00	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
3cfiG00	3.30.1300.30	:2-Layer Sandwich	:Pantoate--beta-alanine Ligase; Chain: A,domain 2	:GSPII I/J protein-like
3cfiI00	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
3cfiJ00	3.30.1300.30	:2-Layer Sandwich	:Pantoate--beta-alanine Ligase; Chain: A,domain 2	:GSPII I/J protein-like
3cfiL00	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins