PDB ID : 3d7l [A2]

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ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AC
BD
Title
THE CRYSTAL STRUCTURE OF THE PROTEIN LIN1944 FROM LISTERIA INNOCUA .

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
3d7l
Not in PubMed X-RAY DIFFRACTION/2.06 MSE:SELENOMETHIONINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2] [A2] [A2]

Interfaces
Interface ID Chain Inaterface
Class		 Interface Type Contact Type
3d7l_AB A
B		 HN
HN		 i16_CR(H26,N12)_HH(S4)_HN(L2,S5)
i15_CR(H13,N13)_HH(S2)_HN(L1,S5) 		c5_RP(HH40,NN13,HN17,NH14)_HH(P2,A2,S2)_HN(L3,S7)
c6_RP(HH23,NN11,HN11,NH12)_HH(P1,A1,S3)_HN(L2,S6)

Interface Class
Interface ID Interface 1 Interface 2
Domain Number of contact residues Binding site Class Percentages of Secondary structures(%) Domain Number of contact residues Binding site Class Percentages of Secondary structures(%)
H E N H E N
3d7l_AB A 34 HN 47.1 100 52.9 B 34 HN 50 0 50

Interface Type: Information for each interface
Interface ID chain Number of contact residues Number of elements Number of contacts between Secondary structure elements
HH EE HE HN EN
Hn En Nn H E N R L P A S P A S Ph Ah Ih P A S L S L S
3d7l_AB A 16 34 18 4 0 5 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 4 0 0
3d7l_AB B 17 0 17 4 0 5 0 0 0 0 2 0 0 0 0 0 0 0 0 0 2 6 0 0

Contact Type: Information of contacts between interfaces
Interface ID Number of residue pairs between SS elements Number of contacts between Secondary structure elements
H-H E-E N-N H-E H-N N-E E-H N-H E-N H-H E-E H-E H-N E-N
P A S Ih P A S IPh IAh P A S Ih L S Ih L S Ih
3d7l_AB 30 0 27 0 11 0 0 12 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
x66877_Not ClassifiedNot Classified 668Not Classified 668Not Classified 668Not Classified 668Not Classified 66877

CATH
CATH ID Node Class Architecture Topology Homology
3d7lA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lB003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lC003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lD003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lE003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lF003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lG003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lH003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3d7lI003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain