PDB ID : 3dc2 [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CA
DB
Title
CRYSTAL STRUCTURE OF SERINE BOUND D-3-PHOSPHOGLYCERATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
3dc2
18627175 X-RAY DIFFRACTION/2.7 SER:SERINE
TLA:L(+)-TARTARIC ACID
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
209073 A:317-451Alpha and beta proteins (a+b)FwdE/GAPDH domain-likeSerine metabolism enzymes domainSerA intervening domain-likeD-3-phosphoglycerate dehydrogenase SerAMycobacterium tuberculosis [TaxId: 1773]
209071 A:4-98
A:283-316		Alpha and beta proteins (a/b)Flavodoxin-likeFormate/glycerate dehydrogenase catalytic domain-likeFormate/glycerate dehydrogenases, substrate-binding domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]
209074 A:452-529Alpha and beta proteins (a+b)Ferredoxin-likeACT-likePhosphoglycerate dehydrogenase, regulatory (C-terminal) domainPhosphoglycerate dehydrogenase, regulatory (C-terminal) domainMycobacterium tuberculosis [TaxId: 1773]
209072 A:99-282Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsFormate/glycerate dehydrogenases, NAD-domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]
209077 B:317-451Alpha and beta proteins (a+b)FwdE/GAPDH domain-likeSerine metabolism enzymes domainSerA intervening domain-likeD-3-phosphoglycerate dehydrogenase SerAMycobacterium tuberculosis [TaxId: 1773]
209075 B:4-98
B:283-316		Alpha and beta proteins (a/b)Flavodoxin-likeFormate/glycerate dehydrogenase catalytic domain-likeFormate/glycerate dehydrogenases, substrate-binding domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]
209078 B:452-529Alpha and beta proteins (a+b)Ferredoxin-likeACT-likePhosphoglycerate dehydrogenase, regulatory (C-terminal) domainPhosphoglycerate dehydrogenase, regulatory (C-terminal) domainMycobacterium tuberculosis [TaxId: 1773]
209076 B:99-282Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsFormate/glycerate dehydrogenases, NAD-domainPhosphoglycerate dehydrogenaseMycobacterium tuberculosis [TaxId: 1773]

CATH
CATH ID Node Class Architecture Topology Homology
3dc2A013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3dc2A023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3dc2A033.30.1330.90:2-Layer Sandwich:60s Ribosomal Protein L30; Chain: A; :D-3-phosphoglycerate dehydrogenase; domain 3
3dc2A043.30.70.260:2-Layer Sandwich:Alpha-Beta Plaits:
3dc2B013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3dc2B023.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3dc2B033.30.1330.90:2-Layer Sandwich:60s Ribosomal Protein L30; Chain: A; :D-3-phosphoglycerate dehydrogenase; domain 3
3dc2B043.30.70.260:2-Layer Sandwich:Alpha-Beta Plaits: