PDB ID : 3jd4 [A6]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
EE
FF
Title
GLUTAMATE DEHYDROGENASE IN COMPLEX WITH NADH AND GTP, CLOSED CONFORMATION

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
3jd4
27036132 ELECTRON MICROSCOPY/3.4 GTP:GUANOSINE-5___sq___-TRIPHOSPHATE
NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A6] [A6] [A6]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
x25858_Not ClassifiedNot Classified 258Not Classified 258Not Classified 258Not Classified 258Not Classified 25858

CATH
CATH ID Node Class Architecture Topology Homology
3jd4A011.10.287.140:Orthogonal Bundle:Helix Hairpins:
3jd4A023.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
3jd4A033.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3jd4B011.10.287.140:Orthogonal Bundle:Helix Hairpins:
3jd4B023.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
3jd4B033.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3jd4C011.10.287.140:Orthogonal Bundle:Helix Hairpins:
3jd4C023.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
3jd4C033.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3jd4D011.10.287.140:Orthogonal Bundle:Helix Hairpins:
3jd4D023.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
3jd4D033.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3jd4E011.10.287.140:Orthogonal Bundle:Helix Hairpins:
3jd4E023.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
3jd4E033.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3jd4F011.10.287.140:Orthogonal Bundle:Helix Hairpins:
3jd4F023.40.50.10860:3-Layer(aba) Sandwich:Rossmann fold:Leucine Dehydrogenase, chain A, domain 1
3jd4F033.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain