OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 3k8z [A6]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

Download

Slab plane

Direction	Proportion
From front	%
From back	%
Move slab

Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D
E	E
F	F

Title

CRYSTAL STRUCTURE OF GUDB1 A DECRYPTIFIED SECONDARY GLUTAMATE DEHYDROGENASE FROM B. SUBTILIS

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
3k8z			20630473	X-RAY DIFFRACTION/2.4

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A6]	[A6]	[A6]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
212213	A:17-188	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212214	A:189-423	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212215	B:17-188	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212216	B:189-423	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212217	C:17-188	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212218	C:189-423	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212219	D:17-188	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212220	D:189-423	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212221	E:17-188	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212222	E:189-423	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212223	F:17-188	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]
212224	F:189-423	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
3k8zA01	1.10.8.1210		:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3k8zA02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3k8zA03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3k8zB01	1.10.8.1210		:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3k8zB02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3k8zB03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3k8zC01	1.10.8.1210		:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3k8zC02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3k8zC03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3k8zD01	1.10.8.1210		:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3k8zD02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3k8zD03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3k8zE01	1.10.8.1210		:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3k8zE02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3k8zE03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3k8zF01	1.10.8.1210		:Orthogonal Bundle	:Helicase, Ruva Protein; domain 3	:
3k8zF02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
3k8zF03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain