PDB ID : 3kyd [ABC]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CD
Title
HUMAN SUMO E1~SUMO1-AMP TETRAHEDRAL INTERMEDIATE MIMIC

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
3kyd
20164921 X-RAY DIFFRACTION/2.61 EDO:1,2-ETHANEDIOL
VMX:5___sq___-{[(3-AMINOPROPYL)SULFONYL]AMINO}-5___sq___-DEOXYADENOSINE
ZN:ZINC ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[ABC] [ABC] [ABC]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
179807 D:Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeUbiquitin-relatedSUMO-1 (smt3 homologue)Human (Homo sapiens) [TaxId: 9606]

CATH
CATH ID Node Class Architecture Topology Homology
3kydA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3kydB013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3kydB021.10.10.520:Orthogonal Bundle:Arc Repressor Mutant, subunit A:Ubiquitin activating enzymes (Uba3). Chain: B, domain 2
3kydB033.10.290.20:Roll:Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A:Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3
3kydD003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1