OLIGAMI : Oligomer Architecture and Molecular Interface

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Title

CRYSTAL STRUCTURE OF GAMMA-HYDROXYBUTYRATE DEHYDROGENASE FROM GEOBACTER SULFURREDUCENS IN COMPLEX WITH NADP+

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
3pdu			24878278	X-RAY DIFFRACTION/1.89	GOL:GLYCEROL NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A4]	[A4]	[A4]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
233222	A:1-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
233224	A:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
294486	A:287-287	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic
233225	B:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
233223	B:2-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
294487	B:287-287	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic
233221	C:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
233219	C:2-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
294488	C:287-287	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic
233227	D:1-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
233231	D:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
294489	D:287-287	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic
233226	E:1-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
233228	E:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
294490	E:287-287	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic
233230	F:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
233229	F:2-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
294491	F:287-287	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic
239604	G:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
239603	G:3-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
239606	H:164-286	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
239605	H:2-163	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Geobacter sulfurreducens [TaxId: 35554]
294492	H:287-287	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic

CATH

CATH ID	Node	Architecture	Topology	Homology
3pduA01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduA02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
3pduB01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduB02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
3pduC01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduC02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
3pduD01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduD02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
3pduE01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduE02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
3pduF01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduF02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
3pduG01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduG02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
3pduH01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
3pduH02	1.10.1040.10	:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D

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