PDB ID : 3pqd [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
Title
CRYSTAL STRUCTURE OF L-LACTATE DEHYDROGENASE FROM BACILLUS SUBTILIS COMPLEXED WITH FBP AND NAD+

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
3pqd
Not in PubMed X-RAY DIFFRACTION/2.38 FBP:1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE
NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
214902 A:148-312Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214901 A:3-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214904 B:148-315Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214903 B:4-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214906 C:148-312Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214905 C:4-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214908 D:148-314Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214907 D:4-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214910 E:148-314Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214909 E:4-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214912 F:148-314Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214911 F:4-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214914 G:148-314Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214913 G:2-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214916 H:148-314Alpha and beta proteins (a+b)LDH C-terminal domain-likeLDH C-terminal domain-likeautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]
214915 H:3-147Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesBacillus subtilis [TaxId: 1423]

CATH
CATH ID Node Class Architecture Topology Homology
3pqdA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdA023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
3pqdB013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdB023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
3pqdC013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdC023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
3pqdD013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdD023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
3pqdE013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdE023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
3pqdF013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdF023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
3pqdG013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdG023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
3pqdH013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3pqdH023.90.110.10:Alpha-Beta Complex:L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal