PDB ID : 3vdr [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BD
CB
DC
Title
CRYSTAL STRUCTURE OF D-3-HYDROXYBUTYRATE DEHYDROGENASE, PREPARED IN THE PRESENCE OF THE SUBSTRATE D-3-HYDROXYBUTYRATE AND NAD(+)

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
3vdr
19342772 X-RAY DIFFRACTION/3 3HR:(3R)-3-HYDROXYBUTANOIC ACID
AAE:ACETOACETIC ACID
CA:CALCIUM ION
CL:CHLORIDE ION
NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE
NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
250518 A:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesautomated matchesAlcaligenes faecalis [TaxId: 511]
250519 B:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesautomated matchesAlcaligenes faecalis [TaxId: 511]
250520 C:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesautomated matchesAlcaligenes faecalis [TaxId: 511]
250521 D:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesautomated matchesAlcaligenes faecalis [TaxId: 511]

CATH
CATH ID Node Class Architecture Topology Homology
3vdrA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3vdrB003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3vdrC003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
3vdrD003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain