PDB ID : 4bmv [A2]

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ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
Title
SHORT-CHAIN DEHYDROGENASE FROM SPHINGOBIUM YANOIKUYAE IN COMPLEX WITH NADPH

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
4bmv
Not in PubMed X-RAY DIFFRACTION/2.5 NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2] [A2] [A2]

Interfaces
Interface ID Chain Inaterface
Class		 Interface Type Contact Type
4bmv_AB A
B		 HN
HN		 i9_CR(H35,N17)_HH(P1,A1,S3)_HN(L3,S6)
i9_CR(H35,N17)_HH(P1,A1,S3)_HN(L3,S6) 		c5_RP(HH53,NN37,HN24,NE2,NH29,EN3)_HH(P2,A3,S4)_HE(S1)_HN(L7,S7)_EN(S2)
c5_RP(HH53,NN37,HN24,NE2,NH29,EN3)_HH(P2,A3,S4)_HE(S1)_HN(L7,S7)_EN(S2)

Interface Class
Interface ID Interface 1 Interface 2
Domain Number of contact residues Binding site Class Percentages of Secondary structures(%) Domain Number of contact residues Binding site Class Percentages of Secondary structures(%)
H E N H E N
4bmv_AB A 81 HN 51.9 100 46.9 B 81 HN 51.9 1.2 46.9

Interface Type: Information for each interface
Interface ID chain Number of contact residues Number of elements Number of contacts between Secondary structure elements
HH EE HE HN EN
Hn En Nn H E N R L P A S P A S Ph Ah Ih P A S L S L S
4bmv_AB A 42 81 38 6 1 8 0 0 1 0 3 0 0 0 0 0 0 0 0 1 3 8 0 2
4bmv_AB B 42 1 38 6 1 8 0 0 1 0 3 0 0 0 0 0 0 0 0 1 3 8 0 2

Contact Type: Information of contacts between interfaces
Interface ID Number of residue pairs between SS elements Number of contacts between Secondary structure elements
H-H E-E N-N H-E H-N N-E E-H N-H E-N H-H E-E H-E H-N E-N
P A S Ih P A S IPh IAh P A S Ih L S Ih L S Ih
4bmv_AB 65 0 76 0 45 1 0 45 1 0 4 7 0 0 0 0 0 0 0 0 0 0 10 6 0 0 2 0

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
x17867_Not ClassifiedNot Classified 178Not Classified 178Not Classified 178Not Classified 178Not Classified 17867

CATH
CATH ID Node Class Architecture Topology Homology
4bmvA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvB003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvC003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvD003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvE003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvF003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvG003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvH003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvI003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4bmvJ003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain