PDB ID : 4ndn [A4B2]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
From front %
From back %
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
EE
FF
Title
STRUCTURAL INSIGHTS OF MAT ENZYMES: MATA2B COMPLEXED WITH SAM AND PPNP

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
4ndn
25075345 X-RAY DIFFRACTION/2.34 EDO:1,2-ETHANEDIOL
MG:MAGNESIUM ION
PPK:(DIPHOSPHONO)AMINOPHOSPHONIC ACID
SAM:S-ADENOSYLMETHIONINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4B2] [A4B2] [A4B2]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
259829 A:135-251Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
259828 A:15-115Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
259830 A:252-395Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
263124 B:126-251Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
263123 B:13-125Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
263125 B:252-395Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
263127 C:135-251Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
263126 C:15-113Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
263128 C:252-395Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
257985 D:126-251Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
257984 D:14-125Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
257986 D:252-395Alpha and beta proteins (a+b)S-adenosylmethionine synthetaseS-adenosylmethionine synthetaseautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
257987 E:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]
259831 F:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]

CATH
CATH ID Node Class Architecture Topology Homology
4ndnA013.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnA023.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnA033.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnB013.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnB023.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnB033.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnC013.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnC023.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnC033.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnD013.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnD023.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnD033.30.300.10:2-Layer Sandwich:GMP Synthetase; Chain A, domain 3:
4ndnE003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4ndnF003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain