PDB ID : 4nnj [A3B2]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
EE
Title
CRYSTAL STRUCTURE OF UBA1 IN COMPLEX WITH UBIQUITIN-AMP AND THIOESTERIFIED UBIQUITIN

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
4nnj
24816100 X-RAY DIFFRACTION/2.4 AMP:ADENOSINE MONOPHOSPHATE
GOL:GLYCEROL
SO4:SULFATE ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A3B2] [A3B2] [A3B2]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
299834 B:-1-0ArtifactsTagsTagsTagsN-terminal TagsSynthetic
257173 B:1-76Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeautomated matchesautomated matchesBaker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
299835 D:0-0ArtifactsTagsTagsTagsN-terminal TagsSynthetic
259837 D:1-76Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeautomated matchesautomated matchesBaker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
299836 E:0-0ArtifactsTagsTagsTagsN-terminal TagsSynthetic
263171 E:1-76Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeautomated matchesautomated matchesBaker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]

CATH
CATH ID Node Class Architecture Topology Homology
4nnjA013.50.50.80:3-Layer(bba) Sandwich:FAD/NAD(P)-binding domain:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1
4nnjA023.40.50.12550:3-Layer(aba) Sandwich:Rossmann fold:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2
4nnjA032.40.30.180:Beta Barrel:Elongation Factor Tu (Ef-tu); domain 3:Ubiquitin-activating enzyme E1, FCCH domain
4nnjA043.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4nnjA051.10.10.2660:Orthogonal Bundle:Arc Repressor Mutant, subunit A:Ubiquitin-activating enzyme E1, SCCH domain
4nnjA063.10.290.60:Roll:Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A:Ubiquitin-activating enzyme E1, UFD domain
4nnjB003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
4nnjC013.50.50.80:3-Layer(bba) Sandwich:FAD/NAD(P)-binding domain:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1
4nnjC023.40.50.12550:3-Layer(aba) Sandwich:Rossmann fold:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2
4nnjC032.40.30.180:Beta Barrel:Elongation Factor Tu (Ef-tu); domain 3:Ubiquitin-activating enzyme E1, FCCH domain
4nnjC043.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4nnjC051.10.10.2660:Orthogonal Bundle:Arc Repressor Mutant, subunit A:Ubiquitin-activating enzyme E1, SCCH domain
4nnjC063.10.290.60:Roll:Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A:Ubiquitin-activating enzyme E1, UFD domain
4nnjD003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
4nnjE003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1