PDB ID : 4rdi [A2]

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ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
Title
CRYSTAL STRUCTURE OF E. COLI TRNA N6-THREONYLCARBAMOYLADENOSINE DEHYDRATASE, TCDA

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
4rdi
26101842 X-RAY DIFFRACTION/1.95 ATP:ADENOSINE-5___sq___-TRIPHOSPHATE
GOL:GLYCEROL
MSE:SELENOMETHIONINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2] [A2] [A2]

Interfaces
Interface ID Chain Inaterface
Class		 Interface Type Contact Type
4rdi_AB A
B		 HEN
HEN		 i16_CR(H18,E4,N22)_CE(H4,E2,N6)_HH(P1,S1)_HE(S1)_HN(L1,S5)_EN(S4)
i16_CR(H18,E4,N22)_CE(H4,E2,N6)_HH(P1,S1)_HE(S1)_HN(L1,S5)_EN(S4) 		c3_RP(HH36,NN33,HE3,HN33,NE2,EH3,NH32,EN3)_HH(P2,A2,S4)_HE(P1)_HN(L8,S8)_EN(S3)
c3_RP(HH36,NN33,HE3,HN33,NE2,EH3,NH32,EN3)_HH(P2,A2,S4)_HE(P1)_HN(L8,S8)_EN(S3)

Interface Class
Interface ID Interface 1 Interface 2
Domain Number of contact residues Binding site Class Percentages of Secondary structures(%) Domain Number of contact residues Binding site Class Percentages of Secondary structures(%)
H E N H E N
4rdi_AB A 51 HEN 39.2 100 56.9 B 49 HEN 46.9 4.1 49

Interface Type: Information for each interface
Interface ID chain Number of contact residues Number of elements Number of contacts between Secondary structure elements
HH EE HE HN EN
Hn En Nn H E N R L P A S P A S Ph Ah Ih P A S L S L S
4rdi_AB A 20 51 29 4 1 6 0 0 1 0 2 0 0 0 0 0 0 0 0 1 1 9 0 1
4rdi_AB B 23 2 24 5 1 6 0 0 2 0 3 0 0 0 0 0 0 0 0 1 1 8 0 1

Contact Type: Information of contacts between interfaces
Interface ID Number of residue pairs between SS elements Number of contacts between Secondary structure elements
H-H E-E N-N H-E H-N N-E E-H N-H E-N H-H E-E H-E H-N E-N
P A S Ih P A S IPh IAh P A S Ih L S Ih L S Ih
4rdi_AB 18 0 10 0 59 2 0 42 2 0 2 3 0 0 0 0 0 0 0 0 0 0 12 5 7 0 2 0

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
x35601_Not ClassifiedNot Classified 356Not Classified 356Not Classified 356Not Classified 356Not Classified 35601

CATH
CATH ID Node Class Architecture Topology Homology
4rdiA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4rdiB003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4rdiC003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4rdiD003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain