PDB ID : 4rgb [A2]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Slab plane

Direction Proportion
From front %
From back %
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
Title
CRYSTAL STRUCTURE OF A PUTATIVE CARVEOL DEHYDROGENASE FROM MYCOBACTERIUM AVIUM BOUND TO NAD

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
4rgb
28120876 X-RAY DIFFRACTION/1.95 NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2] [A2] [A2]

Interfaces
Interface ID Chain Inaterface
Class		 Interface Type Contact Type
4rgb_AB A
B		 HEN
HEN		 i8_CR(H11,E6,N14)_CE(H2,E2,N4)_HH(S1)_EE(Ah1)_HE(P1,S1)_HN(L1,S3)_EN(S4)
i8_CR(H11,E6,N14)_CE(H2,E2,N4)_HH(S1)_EE(Ah1)_HE(P1,S1)_HN(L1,S3)_EN(S4) 		c1_RP(HH8,EE5,NN24,HE5,HN9,NE8,EH6,NH9,EN8)_HH(S1)_EE(A1,S2)_HE(P1,A1,S2)_HN(L2,S4)_EN(L2,S4)
c1_RP(HH8,EE5,NN24,HE5,HN9,NE8,EH6,NH9,EN8)_HH(S1)_EE(A1,S2)_HE(P1,A1,S2)_HN(L2,S4)_EN(L2,S4)

Interface Class
Interface ID Interface 1 Interface 2
Domain Number of contact residues Binding site Class Percentages of Secondary structures(%) Domain Number of contact residues Binding site Class Percentages of Secondary structures(%)
H E N H E N
4rgb_AB A 37 HEN 21.6 100 67.6 B 36 HEN 22.2 11.1 66.7

Interface Type: Information for each interface
Interface ID chain Number of contact residues Number of elements Number of contacts between Secondary structure elements
HH EE HE HN EN
Hn En Nn H E N R L P A S P A S Ph Ah Ih P A S L S L S
4rgb_AB A 8 37 25 2 2 4 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 1 4
4rgb_AB B 8 4 24 2 2 4 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 1 4

Contact Type: Information of contacts between interfaces
Interface ID Number of residue pairs between SS elements Number of contacts between Secondary structure elements
H-H E-E N-N H-E H-N N-E E-H N-H E-N H-H E-E H-E H-N E-N
P A S Ih P A S IPh IAh P A S Ih L S Ih L S Ih
4rgb_AB 5 1 40 1 12 7 1 11 7 0 1 0 0 0 0 1 0 0 0 0 2 0 4 0 0 2 2 0

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
260434 A:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesMycobacterium avium [TaxId: 243243]
263865 B:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsautomated matchesautomated matchesMycobacterium avium [TaxId: 243243]

CATH
CATH ID Node Class Architecture Topology Homology
4rgbA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4rgbB003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain