Title
CRYSTAL STRUCTURE OF LIGL IN COMPLEX WITH NADH AND GGE FROM SPHINGOBIUM SP. STRAIN SYK-6
Structure Summary
PDB ID |
Mutant |
OPM |
Pub Med |
Method/Resolution |
HETNAM |
4yai |
|
|
26940872 |
X-RAY DIFFRACTION/1.6 |
GGE:(1S,2R)-1-(4-HYDROXY-3-METHOXYPHENYL)-2-(2-METHOXYPHENOXY)PROPANE-1,3-DIOL MG:MAGNESIUM ION NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
|
Chain Formula |
Amino Acid sequence |
SCOPe Family Level |
CATH Homology Level |
[A2] |
[A2] |
[A2] |
Interfaces
Interface ID |
Chain |
Inaterface Class |
Interface Type |
Contact Type |
4yai_AB |
A B |
HEN
HEN |
i16_CR(H18,E4,N22)_CE(H4,E2,N6)_HH(P1,S1)_HE(S1)_HN(L1,S5)_EN(S4)
i16_CR(H18,E4,N22)_CE(H4,E2,N6)_HH(P1,S1)_HE(S1)_HN(L1,S5)_EN(S4)
|
c5_RP(HH25,EE2,NN17,HE5,HN23,NE5,EH5,NH25,EN5)_HH(A2,S2)_EE(S1)_HE(A1,S2)_HN(L4,S6)_EN(L1,S4)
c5_RP(HH25,EE2,NN17,HE5,HN23,NE5,EH5,NH25,EN5)_HH(A2,S2)_EE(S1)_HE(A1,S2)_HN(L4,S6)_EN(L1,S4)
|
Interface Class
Interface ID |
Interface 1 |
Interface 2 |
Domain |
Number of contact residues |
Binding site Class |
Percentages of Secondary structures(%) |
Domain |
Number of contact residues |
Binding site Class |
Percentages of Secondary structures(%) |
H |
E |
N |
H |
E |
N |
4yai_AB |
A |
58 |
HEN |
56.9 |
100 |
36.2 |
B |
58 |
HEN |
56.9 |
5.2 |
37.9 |
Interface Type: Information for each interface
Interface ID |
chain |
Number of contact residues |
Number of elements |
Number of contacts between Secondary structure elements |
HH |
EE |
HE |
HN |
EN |
Hn |
En |
Nn |
H |
E |
N |
R |
L |
P |
A |
S |
P |
A |
S |
Ph |
Ah |
Ih |
P |
A |
S |
L |
S |
L |
S |
4yai_AB |
A |
33 |
58 |
21 |
5 |
2 |
6 |
0 |
0 |
1 |
0 |
2 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
2 |
3 |
9 |
0 |
4 |
4yai_AB |
B |
33 |
3 |
22 |
5 |
2 |
6 |
0 |
0 |
1 |
0 |
2 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
2 |
3 |
9 |
0 |
4 |
Contact Type: Information of contacts between interfaces
Interface ID |
Number of residue pairs between SS elements |
Number of contacts between Secondary structure elements |
H-H |
E-E |
N-N |
H-E |
H-N |
N-E |
E-H |
N-H |
E-N |
H-H |
E-E |
H-E |
H-N |
E-N |
P |
A |
S |
Ih |
P |
A |
S |
IPh |
IAh |
P |
A |
S |
Ih |
L |
S |
Ih |
L |
S |
Ih |
4yai_AB |
53 |
0 |
21 |
5 |
26 |
6 |
5 |
27 |
5 |
0 |
4 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
7 |
7 |
0 |
2 |
2 |
2 |
Structual Classification
SCOPe
CATH