PDB ID : 4yb8 [A2B2]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
From front %
From back %
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
Title
CA. KORARCHAEUM CRYPTOFILUM DINUCLEOTIDE FORMING ACETYL-COENZYME A SYNTHETASE 1 IN COMPLEX WITH PHOSPHATE AND ADP

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
4yb8
26787904 X-RAY DIFFRACTION/1.9 ADP:ADENOSINE-5___sq___-DIPHOSPHATE
MG:MAGNESIUM ION
NA:SODIUM ION
PO4:PHOSPHATE ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2B2] [A2B2] [A2B2]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
x74027_Not ClassifiedNot Classified 740Not Classified 740Not Classified 740Not Classified 740Not Classified 74027

CATH
CATH ID Node Class Architecture Topology Homology
4yb8A013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4yb8A023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4yb8A033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4yb8B013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
4yb8B023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain
4yb8C013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4yb8C023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4yb8C033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4yb8D013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
4yb8D023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain