PDB ID : 4ybz [A2B2]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
From front %
From back %
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
Title
CA. KORARCHAEUM CRYPTOFILUM DINUCLEOTIDE FORMING ACETYL-COENZYME A SYNTHETASE 1 IN COMPLEX WITH ADP AND WITH PHOSPHORYLATED PHOSPHOHISTIDINE SEGMENT (SITE I ORIENTATION)

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
4ybz
26787904 X-RAY DIFFRACTION/2.1 ADP:ADENOSINE-5___sq___-DIPHOSPHATE
MG:MAGNESIUM ION
NEP:N1-PHOSPHONOHISTIDINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2B2] [A2B2] [A2B2]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
x54131_Not ClassifiedNot Classified 541Not Classified 541Not Classified 541Not Classified 541Not Classified 54131

CATH
CATH ID Node Class Architecture Topology Homology
4ybzA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4ybzA023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4ybzA033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4ybzB013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
4ybzB023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain
4ybzC013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
4ybzC023.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4ybzC033.40.50.261:3-Layer(aba) Sandwich:Rossmann fold:Succinyl-CoA synthetase domains
4ybzD013.30.470.20:2-Layer Sandwich:D-amino Acid Aminotransferase; Chain A, domain 1:ATP-grasp fold, B domain
4ybzD023.30.1490.20:2-Layer Sandwich:Dna Ligase; domain 1:ATP-grasp fold, A domain