OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 4yr9 [A2]

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AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
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Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

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Secondary Structure

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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	C

Title

MOUSE TDH WITH NAD+ BOUND

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
4yr9			26492815	X-RAY DIFFRACTION/2.8	GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A2]	[A2]	[A2]

Interfaces

Interface ID	Chain	Inaterface Class	Interface Type	Contact Type
4yr9_AB	A B	HN HN	i15_CR(H13,N13)_HH(S2)_HN(L1,S5) i15_CR(H13,N13)_HH(S2)_HN(L1,S5)	c2_RP(HH12,NN12,HN12,NE1,NH12,EN2)_HH(A1,S4)_HN(L4,S4)_EN(S2) c2_RP(HH12,NN12,HN12,NE1,NH12,EN2)_HH(A1,S4)_HN(L4,S4)_EN(S2)

Interface Class

Interface ID	Interface 1						Interface 2
	Domain	Number of contact residues	Binding site Class	Percentages of Secondary structures(%)			Domain	Number of contact residues	Binding site Class	Percentages of Secondary structures(%)
	Domain	Number of contact residues	Binding site Class	H	E	N	Domain	Number of contact residues	Binding site Class	H	E	N
4yr9_AB	A	29	HN	58.6	100	37.9	B	31	HN	54.8	3.2	41.9

Interface Type: Information for each interface

Interface ID	chain	Number of contact residues			Number of elements					Number of contacts between Secondary structure elements
		Number of contact residues			Number of elements					HH			EE						HE			HN		EN
		Hn	En	Nn	H	E	N	R	L	P	A	S	P	A	S	Ph	Ah	Ih	P	A	S	L	S	L	S
4yr9_AB	A	17	29	11	4	1	3	0	0	0	0	4	0	0	0	0	0	0	0	0	1	2	4	0	1
4yr9_AB	B	17	1	13	3	1	4	0	0	0	0	2	0	0	0	0	0	0	0	0	1	1	6	0	1

Contact Type: Information of contacts between interfaces

Interface ID	Number of residue pairs between SS elements									Number of contacts between Secondary structure elements
	H-H	E-E	N-N	H-E	H-N	N-E	E-H	N-H	E-N	H-H				E-E					H-E				H-N			E-N
	H-H	E-E	N-N	H-E	H-N	N-E	E-H	N-H	E-N	P	A	S	Ih	P	A	S	IPh	IAh	P	A	S	Ih	L	S	Ih	L	S	Ih
4yr9_AB	31	0	12	0	11	1	0	14	1	0	3	3	0	0	0	0	0	0	0	0	0	0	2	7	0	0	2	0

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
312436	A:	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]
312421	B:	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]
312449	C:	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]
312300	D:	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]
312411	E:	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]
312168	F:	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
4yr9A00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
4yr9B00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
4yr9C00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
4yr9D00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
4yr9E00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
4yr9F00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain