PDB ID : 5a5e [A]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

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Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
Title
CRYSTAL STRUCTURE OF MURD LIGASE FROM ESCHERICHIA COLI

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
5a5e
27031227 X-RAY DIFFRACTION/1.84 MPD:(4S)-2-METHYL-2,4-PENTANEDIOL
NI:NICKEL (II) ION
SO4:SULFATE ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A] [A] [A]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
315197 A:1-93Alpha and beta proteins (a/b)MurCD N-terminal domainMurCD N-terminal domainMurCD N-terminal domainUDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurDEscherichia coli [TaxId: 562]
315199 A:298-437Alpha and beta proteins (a/b)MurD-like peptide ligases, peptide-binding domainMurD-like peptide ligases, peptide-binding domainMurCDEF C-terminal domainUDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurDEscherichia coli [TaxId: 562]
315198 A:94-297Alpha and beta proteins (a/b)Ribokinase-likeMurD-like peptide ligases, catalytic domainMurCDEFUDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurDEscherichia coli [TaxId: 562]

CATH
CATH ID Node Class Architecture Topology Homology
5a5eA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
5a5eA023.40.1190.10:3-Layer(aba) Sandwich:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase:Mur-like, catalytic domain
5a5eA033.90.190.20:Alpha-Beta Complex:Protein-Tyrosine Phosphatase; Chain A:Mur ligase, C-terminal domain