PDB ID : 5a5f [A]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
Title
CRYSTAL STRUCTURE OF MURD LIGASE FROM ESCHERICHIA COLI IN COMPLEX WITH UMA AND ADP

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
5a5f
27031227 X-RAY DIFFRACTION/1.9 ADP:ADENOSINE-5___sq___-DIPHOSPHATE
MLI:MALONATE ION
UMA:URIDINE-5___sq___-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A] [A] [A]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
316488 A:1-93Alpha and beta proteins (a/b)MurCD N-terminal domainMurCD N-terminal domainautomated matchesautomated matchesEscherichia coli [TaxId: 83333]
316492 A:298-437Alpha and beta proteins (a/b)MurD-like peptide ligases, peptide-binding domainMurD-like peptide ligases, peptide-binding domainautomated matchesautomated matchesEscherichia coli [TaxId: 83333]
316493 A:438-438ArtifactsTagsTagsTagsC-terminal TagsSynthetic
316490 A:94-297Alpha and beta proteins (a/b)Ribokinase-likeMurD-like peptide ligases, catalytic domainMurCDEFautomated matchesEscherichia coli [TaxId: 83333]

CATH
CATH ID Node Class Architecture Topology Homology
5a5fA013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
5a5fA023.40.1190.10:3-Layer(aba) Sandwich:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase:Mur-like, catalytic domain
5a5fA033.90.190.20:Alpha-Beta Complex:Protein-Tyrosine Phosphatase; Chain A:Mur ligase, C-terminal domain