Title
CRYSTAL STRUCTURE OF IRIDOID SYNTHASE FROM CANTHARANTHUS ROSEUS IN COMPLEX WITH NAD+ AND 10-OXOGERANIAL
Structure Summary
PDB ID |
Mutant |
OPM |
Pub Med |
Method/Resolution |
HETNAM |
5dbi |
|
|
26768532 |
X-RAY DIFFRACTION/2.2 |
NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE XOG:(2E,6E)-2,6-DIMETHYLOCTA-2,6-DIENEDIAL
|
Chain Formula |
Amino Acid sequence |
SCOPe Family Level |
CATH Homology Level |
[A2] |
[A2] |
[A2] |
Interfaces
Interface ID |
Chain |
Inaterface Class |
Interface Type |
Contact Type |
5dbi_AB |
A B |
HN
HN |
i4_CR(H9,N8)_HN(L1,S2)
i4_CR(H9,N8)_HN(L1,S2)
|
c9_RP(HH5,NN15,HN11,NH8)_HH(S1)_HN(L2,S3)_EN(S1)
c9_RP(HH5,NN15,HN11,NH8)_HH(S1)_HN(L2,S3)_EN(S1)
|
Interface Class
Interface ID |
Interface 1 |
Interface 2 |
Domain |
Number of contact residues |
Binding site Class |
Percentages of Secondary structures(%) |
Domain |
Number of contact residues |
Binding site Class |
Percentages of Secondary structures(%) |
H |
E |
N |
H |
E |
N |
5dbi_AB |
A |
21 |
HN |
28.6 |
100 |
71.4 |
B |
21 |
HN |
28.6 |
0 |
71.4 |
Interface Type: Information for each interface
Interface ID |
chain |
Number of contact residues |
Number of elements |
Number of contacts between Secondary structure elements |
HH |
EE |
HE |
HN |
EN |
Hn |
En |
Nn |
H |
E |
N |
R |
L |
P |
A |
S |
P |
A |
S |
Ph |
Ah |
Ih |
P |
A |
S |
L |
S |
L |
S |
5dbi_AB |
A |
6 |
21 |
15 |
3 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
5dbi_AB |
B |
6 |
0 |
15 |
3 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
Contact Type: Information of contacts between interfaces
Interface ID |
Number of residue pairs between SS elements |
Number of contacts between Secondary structure elements |
H-H |
E-E |
N-N |
H-E |
H-N |
N-E |
E-H |
N-H |
E-N |
H-H |
E-E |
H-E |
H-N |
E-N |
P |
A |
S |
Ih |
P |
A |
S |
IPh |
IAh |
P |
A |
S |
Ih |
L |
S |
Ih |
L |
S |
Ih |
5dbi_AB |
2 |
0 |
27 |
0 |
12 |
0 |
0 |
12 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
2 |
0 |
0 |
0 |
0 |
Structual Classification
SCOPe
CATH