|
PDB ID | Mutant | OPM | Pub Med | Method/Resolution | HETNAM |
---|---|---|---|---|---|
5f5n | 28137838 | X-RAY DIFFRACTION/1.3 | 5VD:METHYL (1~{R},2~{R},4~{S})-2-METHYL-2,4,5,7,10-PENTAKIS(OXIDANYL)-6,11-BIS(OXIDANYLIDENE)-3,4-DIHYDRO-1~{H}-TETRACENE-1-CARBOXYLATE EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID GOL:GLYCEROL MG:MAGNESIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE |
Chain Formula | ||
---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level |
[A2] | [A2] | [A2] |
Interface ID | Chain | Inaterface Class |
Interface Type | Contact Type |
---|---|---|---|---|
5f5n_AB | A B |
HN HN |
i1_CR(H21,N7)_HH(P1,S1)_HN(L1,S4) i2_CR(H24,N5)_HH(A1,S1)_HN(L1,S2) |
c6_RP(HH48,NN3,HN7,NH7)_HH(P3,A1,S2)_HN(L1,S5) c1_RP(HH58,NN3,HN5,NH5)_HH(P2,A2,S1)_HN(L1,S4) |
Interface ID | Interface 1 | Interface 2 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Domain | Number of contact residues | Binding site Class | Percentages of Secondary structures(%) | Domain | Number of contact residues | Binding site Class | Percentages of Secondary structures(%) | |||||
H | E | N | H | E | N | |||||||
5f5n_AB | A | 25 | HN | 84 | 100 | 16 | B | 23 | HN | 87 | 0 | 13 |
Interface ID | chain | Number of contact residues | Number of elements | Number of contacts between Secondary structure elements | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
HH | EE | HE | HN | EN | |||||||||||||||||||||
Hn | En | Nn | H | E | N | R | L | P | A | S | P | A | S | Ph | Ah | Ih | P | A | S | L | S | L | S | ||
5f5n_AB | A | 21 | 25 | 4 | 5 | 0 | 3 | 0 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 0 |
5f5n_AB | B | 20 | 0 | 3 | 5 | 0 | 2 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 |
Interface ID | Number of residue pairs between SS elements | Number of contacts between Secondary structure elements | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H-H | E-E | N-N | H-E | H-N | N-E | E-H | N-H | E-N | H-H | E-E | H-E | H-N | E-N | |||||||||||||||
P | A | S | Ih | P | A | S | IPh | IAh | P | A | S | Ih | L | S | Ih | L | S | Ih | ||||||||||
5f5n_AB | 35 | 0 | 0 | 0 | 6 | 0 | 0 | 4 | 0 | 2 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 0 | 0 |
SCOPe ID | Chain | Class | Fold | Superfamily | Family | Protein Domain | Species |
---|---|---|---|---|---|---|---|
x51732 | _ | Not Classified | Not Classified 517 | Not Classified 517 | Not Classified 517 | Not Classified 517 | Not Classified 51732 |
CATH ID | Node | Class | Architecture | Topology | Homology |
---|---|---|---|---|---|
5f5nA00 | 3.40.50.720 | :3-Layer(aba) Sandwich | :Rossmann fold | :NAD(P)-binding Rossmann-like Domain | |
5f5nB00 | 3.40.50.720 | :3-Layer(aba) Sandwich | :Rossmann fold | :NAD(P)-binding Rossmann-like Domain |